PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008627
Common NameRCOM_1616000
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 279aa    MW: 31974.9 Da    PI: 7.38
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008627genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07174223147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      +++WT+eE++++   v+  ++      W+ I + +  ++ +++++s+++++
    30174.m008627 174 KLSWTKEEEKKFEAIVRSNPPSldkcFWDEIFKFFS-TKRREDLVSYYFNV 223
                      689*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011890.003677128IPR000949ELM2 domain
SMARTSM007176.7E-4173226IPR001005SANT/Myb domain
CDDcd001676.27E-5176224No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MHPCMYDDHV GSVYNFRERL RCSKGLPSGI TLSQAQAYSK LPSSTTENDS NSSTKGCSSD  60
YPSTEYSLLD LPVEKTIPLG PDFQAEIPEW TGVVCESDSK WIGARVWPPE KMDNRFVVER  120
EPIGKGRQDS CGCEVPKSVE CVRFHTTERR MKMKREVGVA FYHWRFDKMG EDVKLSWTKE  180
EEKKFEAIVR SNPPSLDKCF WDEIFKFFST KRREDLVSYY FNVFLMQRRA HQNRFTPNNI  240
DSDDDESECG VAPNSSGREA PKSPGSLLYS AKKSHKSGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRMKMKR
2148155RRMKMKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015894.10.0LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1
TrEMBLB9RDU50.0B9RDU5_RICCO; DNA binding protein, putative
STRINGXP_002511884.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724