PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014226
Common NameRCOM_1598630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 422aa    MW: 47603.8 Da    PI: 5.1002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014226genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-08353407146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ W +eE+e l ++v+++ +       Wk+I +         Rt+ ++k++w++
    30170.m014226 353 RLHWKPEEEEMLREGVQKFSTTvnknlPWKKILEFGHhvfdGSRTPADLKDKWRN 407
                      789******************************9888999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.3E-8979IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.75E-71874IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS0135902467IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.8E-10348412IPR009057Homeodomain-like
PROSITE profilePS5129410.21348413IPR017930Myb domain
SuperFamilySSF466899.72E-10351410IPR009057Homeodomain-like
SMARTSM007171.9E-5352411IPR001005SANT/Myb domain
PfamPF002496.9E-6354408IPR001005SANT/Myb domain
CDDcd116601.93E-10356409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDISNESDGR ESNSSSDDEI VNTCLKCNKG GKLLICCGAG CAICLHVECI PRKPKYDEEG  60
NFHCPYCWYK LQQARAQEWK KMALLAKKAL SDFMDSRQVE VGNDKAKLND RRINGADTSV  120
GPERNCCEHF TKMDVDDEVR NETGEVEEDQ NEKNVKISDG CRSTEVVEHE NVSKIHEFEV  180
LHNDEGTEKE KDNEQVIDQW EAGILEGEEQ EDPFNTNCIE EETLVDDALR GSAELKSEAL  240
KVSEGNQARK EEEEGVHEDA PAANCTGGDV VADVPKMSDS DNETLAARLS WAKQRANQKA  300
NSTKKSSHHP DNISVEKARN QNEKVIPLKK SRQTQAPAKK LTNLSFPHEK RKRLHWKPEE  360
EEMLREGVQK FSTTVNKNLP WKKILEFGHH VFDGSRTPAD LKDKWRNIVA KDSSAVNGRT  420
LS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576951.10.0uncharacterized protein LOC8274695
TrEMBLB9R8C50.0B9R8C5_RICCO; Uncharacterized protein
STRINGXP_002510568.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-10MYB_related family protein