PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 502aa MW: 52601.8 Da PI: 8.4828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m014220	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H 30170.m014220 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.7	4.1e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ 30170.m014220 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.22E-7	67	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.0E-5	68	90	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.3E-5	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.22E-7	139	165	No hit	No description
SMART	SM00355	77	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MEADNSSQMT LSTNSGGEGT SVVSSFSNQA VPLSLPPPKK KRNLPGMPDP DAEVIALSPK 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT SKEPIKRVYV CPEASCVHHN 120 PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEESA RAQTLTFMDK EGSNNTNMKS VVAVASPPPP PLTPSTTVVS 240 PGVSAQSSEL AENAVNISAA TACLTAPDTS TNSTSTTTSN VFASVFASST AAAISQEGPS 300 SSPSFSNLLS AFTHSDCAAT MSTPRAVEPP SLSLSSSLYL SSNASSLFPD QDQHRHYTQS 360 SLPAMSATAL LQKAAQMGAS SSNASFLRGL GLPVTSSTGQ HNSGNQWDVK PDTSALAAAG 420 LGLGVPSGDI MMGSSALFGN KPTTLDLLGL GMGASSALLN SYGGSFNVGA AAASASPYGG 480 GGGGSSEETW DGAAEKKPNG YN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MEADNSSQMT LSTNSGGEGT SVVSSFSNQA VPLSLPPPKK KRNLPGMPDP DAEVIALSPK  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT SKEPIKRVYV CPEASCVHHN  120
PARALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEESA RAQTLTFMDK EGSNNTNMKS VVAVASPPPP PLTPSTTVVS  240
PGVSAQSSEL AENAVNISAA TACLTAPDTS TNSTSTTTSN VFASVFASST AAAISQEGPS  300
SSPSFSNLLS AFTHSDCAAT MSTPRAVEPP SLSLSSSLYL SSNASSLFPD QDQHRHYTQS  360
SLPAMSATAL LQKAAQMGAS SSNASFLRGL GLPVTSSTGQ HNSGNQWDVK PDTSALAAAG  420
LGLGVPSGDI MMGSSALFGN KPTTLDLLGL GMGASSALLN SYGGSFNVGA AAASASPYGG  480
GGGGSSEETW DGAAEKKPNG YN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-37	140	206	3	69	Zinc finger protein JACKDAW
5b3h_F	7e-37	140	206	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m014220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510356.1	0.0	protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-136	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	B9R7R3	0.0	B9R7R3_RICCO; Nucleic acid binding protein, putative
STRING	XP_002510356.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-115	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	30170.m014220
Entrez Gene	8288898

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]