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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 30170.m014161 | ||||||||
| Common Name | LOC8274635, RCOM_1597120 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family | ARF | ||||||||
| Protein Properties | Length: 950aa MW: 104628 Da PI: 4.9143 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.1 | 1.9e-24 | 148 | 249 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F ++++
30170.m014161 148 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI--RDEK 239
99*********************999*****954444.4.38************************************************..4577 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l+v+v+r+
30170.m014161 240 SQLLVGVRRA 249
778*****97 PP
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| 2 | Auxin_resp | 115.7 | 4.1e-38 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++k++ka+ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
30170.m014161 274 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 357
79********************************988*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.05E-46 | 135 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 4.0E-41 | 141 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.74E-23 | 147 | 248 | No hit | No description |
| SMART | SM01019 | 6.9E-25 | 148 | 250 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.197 | 148 | 250 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.1E-22 | 148 | 249 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 2.6E-33 | 274 | 357 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 1.1E-9 | 827 | 923 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 25.61 | 836 | 920 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 4.86E-8 | 852 | 915 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 950 aa Download sequence Send to blast |
MASVEEKIKA GSFVSSGAQT NLLEEMKLLK EIQDHSGTRK TINSELWYAC AGPLVSLPQV 60 GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLASQLLCQ VHNVTLHADR DTDEIYAQMS 120 LQPVNSEKDV FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYT 180 MQPPTQELVV RDLHDNTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLKAGD SVLFIRDEKS 240 QLLVGVRRAN RQQTTLPSLV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RACPSEFVIP 300 LAKYRKAVFG TQVSVGMRFG MMFETEESGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW 360 DEPGCSDKQN RVSSWEIETP ENLFIFPSLT SGLKRPLHSG YLGGETEWGN LIKRPLIWLP 420 ETANGNFAYP SIPNLCSDRL FKMLMKPQGV NYPGICESSL QEVSAAKGAS LDDIKAMQGT 480 MKHMPQLNQS VVTSVENQNQ SQFCPNQSDT VNSPSSKINA TGNIYPPSNI ENQIPAGNII 540 EKLKSEPELS TDQLSQVTSI VECNEEKPSS SFTNPQNSGN QLEFQNQNQS HLHAQTNLWL 600 VQSSLEPSIL HPQQIHVPQA DANTFNCSLP FLDSDEWMSN PSCLSFPGMY GSSGPVSMFG 660 FQEPSAILPE AGNPSVPLMN QDLWDQQLNN LRFLSPASQN PLAQQDPCSL NSTVAKALSD 720 ESNDQSGIYG SLNIDVGNGG SAVIDPSVSN AILDEFCTAK DADFQNPSDC LVGKEVFSTS 780 QDVQSQITSV SLADSQAFSQ QDFPDSSGGT SSSNVDFDKG NYMQNNSWQQ VAPRVRTYTK 840 VQKAGSVGRS IDVSGFKNYE ELCSAIECMF GLEGLLNNPR ESGWKLVYVD YENDVLLIGD 900 DPWEEFVGCV RCIRILSPSE VQQMSEEGMK LLNNVNMQGL AASIADGSHA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 380 | 5 | 390 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 30170.m014161 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002510508.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | B9R865 | 0.0 | B9R865_RICCO; Auxin response factor | ||||
| STRING | XP_002510508.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 30170.m014161 |
| Entrez Gene | 8274635 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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