PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014145
Common NameLOC8275829, RCOM_1596660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BBR-BPC
Protein Properties Length: 339aa    MW: 37663.7 Da    PI: 10.0578
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014145genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind387.22.5e-11813391301
      GAGA_bind   1 mdddgsre..rnkg.yye........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                    mdd g+re  r+k+ +y+        +a +s      +q+m+++aerda+i+ern+a+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l
  30170.m014145   1 MDDGGHREngRHKAdQYKtaqgqwlmQAqPS-----MKQIMAIMAERDAAIHERNMAISEKKAAIAERDMAFLQRDSAIAERNNAIMERDNAIATL 91 
                    9*****999*****9**95554444322233.....35********************************************************** PP

      GAGA_bind  85 llvensla.....salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
                    +++ens+      s++p+g+q+++g+k++++ qq+ +  p+ ++ ++ +re++++++lp++   +ea + +++k+++ a   k   ++kk+    k
  30170.m014145  92 QYRENSIPsgnmpSSCPPGCQISRGVKHMHHPQQHAHhmPHSSEASYSTREMQTSDTLPMSPVGSEAAKPRRVKRSKDA---KMAPSNKKTS---K 181
                    *****987889999********************55558999999**************87766666655555544433...3333332222...2 PP

      GAGA_bind 174 skkkvkkesader..............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                    s +k k+es+d +                              sk+++k  dl+ln++++Dest+P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+
  30170.m014145 182 SPRKIKRESEDLNkvmfgkshewkngqdmgggaddlnkqlvvaSKSDWKGHDLGLNQIAFDESTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTL 277
                    2233333333322234455567889*********************************************************************** PP

      GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    S++PLP+++++r+aR++grKmS++af+klL++LaaeGydls pvDLk+hWAkHGtn+++ti+
  30170.m014145 278 SMHPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGYDLSSPVDLKEHWAKHGTNRYITIK 339
                    *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.4E-1051339IPR010409GAGA-binding transcriptional activator
SMARTSM012264.7E-1811339IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKTA QGQWLMQAQP SMKQIMAIMA ERDAAIHERN MAISEKKAAI  60
AERDMAFLQR DSAIAERNNA IMERDNAIAT LQYRENSIPS GNMPSSCPPG CQISRGVKHM  120
HHPQQHAHHM PHSSEASYST REMQTSDTLP MSPVGSEAAK PRRVKRSKDA KMAPSNKKTS  180
KSPRKIKRES EDLNKVMFGK SHEWKNGQDM GGGADDLNKQ LVVASKSDWK GHDLGLNQIA  240
FDESTMPAPV CSCTGVFRQC YKWGNGGWQS SCCTTTLSMH PLPAVPNKRH ARVGGRKMSG  300
SAFSKLLSRL AAEGYDLSSP VDLKEHWAKH GTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014145
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510492.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025012807.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025012811.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025012812.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-160BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLB9R8490.0B9R849_RICCO; Uncharacterized protein
STRINGXP_002510492.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-161basic pentacysteine 6