PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014099
Common NameLOC8275784, RCOM_1595780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 469aa    MW: 52262.7 Da    PI: 6.7535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014099genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.5e-103904271954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  30170.m014099 390 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 427
                    664459******************************88 PP
2BELL106.61.5e-34252323172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +r+ lq k++kL+ llee++ rY++y++ql+ v+ssFe++aglg+ak+Yt+lAl+a+SrhF +L+dai++qi
  30170.m014099 252 DRHHLQVKITKLIALLEEIEGRYEKYYHQLEEVVSSFEEIAGLGAAKSYTALALQAMSRHFCNLRDAIVSQI 323
                    5899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-37183321IPR006563POX domain
PfamPF075261.0E-39189320IPR006563POX domain
PROSITE profilePS5007112.034368431IPR001356Homeobox domain
CDDcd000867.80E-11371432No hitNo description
SMARTSM003892.7E-9371435IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27376437IPR009057Homeodomain-like
SuperFamilySSF466891.24E-17377438IPR009057Homeodomain-like
PfamPF059205.3E-17388427IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVSQDSPPNP ASSMVQQFFI SDSITSQNQF ENQNFNTYGS DLRGSNIFHQ SLGVLPSVQS  60
LGERMSRSID LVRAHSIVSQ ESEISHTRHL MDLLGTANAA NQQAQGLSLS LGCHMLAPQV  120
QYRQRPVNSD LFSSSYLIHG EEARKACNPV IEQVNDEHPF SGYAFASSST SLSRSSCTSY  180
GTESFAIAIK NSRYLKPAQM LLEEIVTVSG KATEINNEKY VGKLFPGGTR GAFGLSSELK  240
AEWCSNGLLP ADRHHLQVKI TKLIALLEEI EGRYEKYYHQ LEEVVSSFEE IAGLGAAKSY  300
TALALQAMSR HFCNLRDAIV SQINATRKKI SQDLPKISTG LSRLSLFDRE TAHNRVSLQQ  360
LGMIQSQRQA WRPIRGLPET SVTILRSWLF EHFLHPYPND SEKLMLASQT GLTKNQVSNW  420
FINARVRLWK PMIEEMYKEE FAADSSEDSN PLLGSSSVTR QGTADNSED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16377435563Homeobox protein Meis2
3k2a_B1e-16377435563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510447.10.0BEL1-like homeodomain protein 11
RefseqXP_015572732.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-109BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLB9R8040.0B9R804_RICCO; Bel1 homeotic protein, putative
STRINGXP_002510447.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-111BEL1-like homeodomain 11