PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014085
Common NameLOC8275767, RCOM_1595300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 436aa    MW: 47471.9 Da    PI: 8.2409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014085genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-053223601255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  30170.m014085 322 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 360
                    7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-11320372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-5320364No hitNo description
Gene3DG3DSA:4.10.280.104.3E-9324367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MESANLHHHH QHQLQGQLVR SSSLSAPSNY GAPSPHAWTQ NITLSTGNLN NNEVAINPRQ  60
KTGTTSISSP LNNPMIQDLG FHWNVNSNNA AAVSLTNHQT SHDHDLQLGK IKEEDELSDS  120
FTKFTEMINS TSAASNTDQD SHLSSTSYIK DEQKYMTDLS EKLLLKTISS GFPINGHPQF  180
SPSLICSSFG SPIPSRGNFS QIYPSINISN LNRSTSPSIS GSFDMNLQAL DLLTSTRFGG  240
SFGQPSHDNL GIYKDNISYD FDRMQNHMPS CSHSKISSIT TKETTEAKRP GSSLMEPKAT  300
LQAAPKKSRL ETRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  360
NQVETLSVPY MKSSRNKSSR NSQSGPTVEE GNFEPKKDLR SRGLCLVPLS CMSYVTGDGG  420
GSSGNIWPPP SFGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510430.10.0transcription factor bHLH110 isoform X3
TrEMBLB9R7Y70.0B9R7Y7_RICCO; Transcription factor, putative
STRINGXP_002510430.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.16e-77bHLH family protein