PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014056
Common NameLOC8269992, RCOM_1594510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 94aa    MW: 10501.7 Da    PI: 9.3844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014056genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68.1e-101659344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W  +a+ +g g+++ ++k ++
    30170.m014056 16 SWTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-GKSPDEVKRHY 59
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7151272IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.6E-51363IPR009057Homeodomain-like
SMARTSM007176.0E-91365IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-131571IPR009057Homeodomain-like
PfamPF002492.9E-81659IPR001005SANT/Myb domain
CDDcd001671.29E-71763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MASSYFSSSP HGSSSSWTPK QNKLFEKALA KYDKDTPDRW QNVAKAVGGK SPDEVKRHYD  60
RLVEDLIYIE SGQAPLPNYK VTGVNGRGIG EEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32885279RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510401.23e-65protein RADIALIS-like 5 isoform X1
SwissprotQ1A1731e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLB9R7V81e-63B9R7V8_RICCO; DNA binding protein, putative
STRINGXP_002510401.12e-64(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-36RAD-like 6