PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30170.m013943 | ||||||||
Common Name | RCOM_1592590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 567aa MW: 63821.7 Da PI: 8.6438 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 18 | 108 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ff ++ s++l+s+rl++p +f+++ +g + + ++l+ +sg+ W+v+l ++s+ +++ GW Fvk++ + gD ++F++dg+ +f +v+v 30170.m013943 18 FFEIF--SSNLSSDRLRIPARFTRHLEGRTSG--SVSLTGPSGNIWTVNL--IQQSEDIFFDHGWPVFVKDHFIACGDLLLFRFDGELCF--TVQV 105 56666..9***************888988655..6***************..9*******************************999999..9999 PP E-S CS B3 97 frk 99 f++ 30170.m013943 106 FDQ 108 987 PP | |||||||
2 | B3 | 43.6 | 5.3e-14 | 255 | 333 | 13 | 94 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 s l +p +f ++h ++++++l++ +g W+v+ ++ ++++ +GW Fv++n++k gD+++F+l+++ el+v 30170.m013943 255 SYTLNIPYQFSTAHlP---SSKTEIVLRTIKGACWTVNSVPtTRVHTSHTFCGGWMAFVRSNDIKIGDVCIFELVRK--YELRV 333 55799******99942...34568**************954566666799999********************9874..33344 PP | |||||||
3 | B3 | 53.2 | 5.4e-17 | 475 | 555 | 13 | 96 |
TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 s l +p +f ++h + +++++l++++g++W+v+ + k+++ +++ +GW Fv++n++kegD+++F+l+ + + e++v++ 30170.m013943 475 SYTLKIPHQFSAAHlpN----YKTEIILRNSHGERWTVNSVPDSKGRTvHTFCGGWMAFVRDNDVKEGDICMFELVTE-C-EMLVHI 555 45699******999533....3468***************6655554469999*********************9863.3.346665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-21 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-21 | 12 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.789 | 16 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.00E-16 | 16 | 107 | No hit | No description |
SMART | SM01019 | 8.1E-13 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-15 | 18 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-21 | 238 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-22 | 239 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.77E-17 | 241 | 337 | No hit | No description |
SMART | SM01019 | 3.2E-10 | 243 | 339 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.183 | 243 | 339 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-11 | 247 | 333 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-23 | 455 | 556 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-23 | 456 | 557 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.96E-20 | 461 | 555 | No hit | No description |
PROSITE profile | PS50863 | 13.563 | 463 | 559 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-13 | 463 | 559 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-14 | 472 | 555 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 567 aa Download sequence Send to blast |
MAKEENEEEL INARRPCFFE IFSSNLSSDR LRIPARFTRH LEGRTSGSVS LTGPSGNIWT 60 VNLIQQSEDI FFDHGWPVFV KDHFIACGDL LLFRFDGELC FTVQVFDQSK CEKEAAFHSK 120 CTQNPIQFYI SIGQKRERDD GDDDGNKDSF LVRSCESMPK KVKRGQEESS LHETKQCWSP 180 CQNTAASSRL NICHEILDPK AEVAIQKRTG KEDRNLADRG YGSIFLEREK RVAQSFISCF 240 PYFVRIMKRF NISGSYTLNI PYQFSTAHLP SSKTEIVLRT IKGACWTVNS VPTTRVHTSH 300 TFCGGWMAFV RSNDIKIGDV CIFELVRKYE LRVFILRVGK EVVEDQSGNV APDGGSIDSM 360 STSHKIENFP KQSRKSGLKV HSRLITKVEV CDRKKSNKSQ AAAFCNRITK HGDAAKGSGT 420 EKQAEAIACS RKNLDVELSP HAAAGLRMMA EAAKSFTSGF PNFVRIMRKF NISGSYTLKI 480 PHQFSAAHLP NYKTEIILRN SHGERWTVNS VPDSKGRTVH TFCGGWMAFV RDNDVKEGDI 540 CMFELVTECE MLVHISGVGG KMLHSPS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30170.m013943 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015574756.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X2 | ||||
TrEMBL | B9R7J8 | 0.0 | B9R7J8_RICCO; Uncharacterized protein | ||||
STRING | XP_002510291.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-21 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30170.m013943 |