PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013861
Common NameLOC8278855, RCOM_1590090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 274aa    MW: 30420.3 Da    PI: 8.8343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013861genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08172212954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  30170.m013861 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 212
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14167222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6173212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-6186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEIDQLTSST ATEDQMEMIM MMDKLPDFFG AYNDVAHDLA PTTEFPGAST TSTTAVSAIP  60
HFMSSPHIAS SPSFMSLPSS VPFTNNNTPM QDESTPPFTS NLAAAERWRD MGEFPGANAY  120
STPSQKRNSM AAMREMIFRI AAMQPIHIDP ESVKPPKRRN VKISKDPQSV AARHRRERIS  180
ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RAQASRPSTS SSSTGIGFPI  240
AMSSGSYFPM GKAYQQQQNA HHHRHQNVQH YGDA
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013861
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510202.10.0transcription factor HEC2 isoform X1
TrEMBLB9R7A90.0B9R7A9_RICCO; Transcription factor, putative
STRINGXP_002510202.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.16e-42bHLH family protein