PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30170.m013842

Common Name

LOC8288576, RCOM_1589580

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 413aa MW: 47328.8 Da PI: 7.8958

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m013842	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	159	182	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++++Lk+H + H 30170.m013842 159 YICGVCGRKCKTNMELKKHFKQlH 182 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	2.5E-5	79	149	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.72	159	187	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	182	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.16E-11	225	313	No hit	No description
Gene3D	G3DSA:3.40.50.1010	2.5E-5	244	309	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MPPLCSNPLN TYSPLLKPRF HLHYPILHFS HQFRNSSSKK LSLTCKPSLP NRCLVINASS 60 ASTSEIDMVP NRQGVYTSKK SKVVVLWDLD NKPPRGPPYL AALALKNLAQ KFGEIIEMSA 120 YANRHAFIHL PNWVLQERRE RKQLDILERK GLVNQTDPYI CGVCGRKCKT NMELKKHFKQ 180 LHERERQKKL NRMRSLKGKK RQRFKERFIS GNHKYNEEAK KLLTPKVGYG LAQELKRAGV 240 YVKTVQDKPQ AADWALKRQI EHSMSRGVDW LFLISDDSDF SDILRRAREA NLGTVVVGDR 300 DRALGRHADL WVPWIGVENG EVTENDLVLK SRIESENFDG KDGFFSITHF DGEIGGVVEG 360 DMDGVIEELA GVSSEWDSAR VSVFSEGEEE KEDYFLSDSE DEGIEEEDDY FFI

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MPPLCSNPLN TYSPLLKPRF HLHYPILHFS HQFRNSSSKK LSLTCKPSLP NRCLVINASS  60
ASTSEIDMVP NRQGVYTSKK SKVVVLWDLD NKPPRGPPYL AALALKNLAQ KFGEIIEMSA  120
YANRHAFIHL PNWVLQERRE RKQLDILERK GLVNQTDPYI CGVCGRKCKT NMELKKHFKQ  180
LHERERQKKL NRMRSLKGKK RQRFKERFIS GNHKYNEEAK KLLTPKVGYG LAQELKRAGV  240
YVKTVQDKPQ AADWALKRQI EHSMSRGVDW LFLISDDSDF SDILRRAREA NLGTVVVGDR  300
DRALGRHADL WVPWIGVENG EVTENDLVLK SRIESENFDG KDGFFSITHF DGEIGGVVEG  360
DMDGVIEELA GVSSEWDSAR VSVFSEGEEE KEDYFLSDSE DEGIEEEDDY FFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m013842

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510181.1	0.0	uncharacterized protein LOC8288576
TrEMBL	B9R788	0.0	B9R788_RICCO; Nucleic acid binding protein, putative
STRING	XP_002510181.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-147	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	30170.m013842
Entrez Gene	8288576