PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013842
Common NameLOC8288576, RCOM_1589580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 413aa    MW: 47328.8 Da    PI: 7.8958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013842genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05159182123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y C+ Cg+ ++++++Lk+H +  H
  30170.m013842 159 YICGVCGRKCKTNMELKKHFKQlH 182
                    89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.5E-579149IPR029060PIN domain-like
PROSITE profilePS5015710.72159187IPR007087Zinc finger, C2H2
PROSITE patternPS000280161182IPR007087Zinc finger, C2H2
CDDcd061671.16E-11225313No hitNo description
Gene3DG3DSA:3.40.50.10102.5E-5244309IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MPPLCSNPLN TYSPLLKPRF HLHYPILHFS HQFRNSSSKK LSLTCKPSLP NRCLVINASS  60
ASTSEIDMVP NRQGVYTSKK SKVVVLWDLD NKPPRGPPYL AALALKNLAQ KFGEIIEMSA  120
YANRHAFIHL PNWVLQERRE RKQLDILERK GLVNQTDPYI CGVCGRKCKT NMELKKHFKQ  180
LHERERQKKL NRMRSLKGKK RQRFKERFIS GNHKYNEEAK KLLTPKVGYG LAQELKRAGV  240
YVKTVQDKPQ AADWALKRQI EHSMSRGVDW LFLISDDSDF SDILRRAREA NLGTVVVGDR  300
DRALGRHADL WVPWIGVENG EVTENDLVLK SRIESENFDG KDGFFSITHF DGEIGGVVEG  360
DMDGVIEELA GVSSEWDSAR VSVFSEGEEE KEDYFLSDSE DEGIEEEDDY FFI
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510181.10.0uncharacterized protein LOC8288576
TrEMBLB9R7880.0B9R788_RICCO; Nucleic acid binding protein, putative
STRINGXP_002510181.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-147C2H2-like zinc finger protein