PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013667
Common NameLOC8265249, RCOM_1586090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 408aa    MW: 44648.5 Da    PI: 5.8733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013667genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10251299355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  30170.m013667 251 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 299
                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.13E-11246303No hitNo description
SuperFamilySSF474596.28E-17246315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16249316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7251299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGTSEDNNEG MAFQSGGESV MNCQSSGMSA NPFFPPAWDP VVSLNQHENF GASMVSQSEF  60
TNSHYAIVME NQGINSSSHL VHYQSDSSYV ELVPKFPSYG SGSFSEMVSS FGLTDCGQIS  120
NSGCHPNYTS NSAANNERTI TNSALSQEDH QLSEEPVVGV SPDGKRRKRL AEPSSPFDPN  180
KNAEEMHKDP SGNSSDIPKE QDEKKSRTEQ NTAANLRGKQ AAKQAKENSH SGEAPKENYI  240
HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ  300
QVEFLSMKLA TVNPELNIDI ERILSKDILH SRGGNAAIMG LSPGINAHPY SHGIFPPNIP  360
VIPNTNPQFP PMPHTVLEND LQNLFQMGFD SGSAIDSLGP NGRLKPEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013667
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510047.10.0transcription factor bHLH74 isoform X2
SwissprotQ6NKN91e-101BH074_ARATH; Transcription factor bHLH74
TrEMBLB9R6V40.0B9R6V4_RICCO; DNA binding protein, putative
STRINGXP_002510047.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.19e-99bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]