PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

G2-like

Protein Properties

Length: 536aa MW: 59206.9 Da PI: 6.3693

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30169.m006598	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.1e-33	315	369	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fvea+ +LGG+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ 30169.m006598 315 KPRMRWTPELHESFVEAIIKLGGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 369 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.375	312	372	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-17	313	369	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-30	314	370	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	315	370	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-9	317	368	IPR001005	SANT/Myb domain
Pfam	PF14379	8.3E-23	406	452	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MAELLFNLGM VSCWKRLFAA NLIQLFLRCY FFGFPVCIIF GSTSPVKLWK VLGLLASENE 60 SLSSKGITQP YFTTLSPVHD FFNSESEGQS CLTSEFSSSR PSPFMLTDSL SPNTMQSIVQ 120 PPKYFLKSGP DMPLSPASHI QHSKSTFQRS SVFCTSLYLS SSSSSETNRQ LGNLPFLPHP 180 SAHAHSLSAI DSTKSPLLFT DDISNPYDEE HSDCLMKDFV NFPGDASRSS FHGMTCASDN 240 LVLADQLELQ FLSDELDIAI TDHGENPRVD EIYETPEASS NPAIGSTCNL NVASVKPSAD 300 APSSHPSPGT AAVHKPRMRW TPELHESFVE AIIKLGGAEK ATPKGVLKLM NVEGLTIYHV 360 KSHLQKYRIA KYLPDKKEEK KASCSEEKKA ASSSTESDNQ KKGMTQITEA LRMQMEVQKQ 420 LHEQLEVQRA LQLRIEEHAR YLQKILEEQQ KAGGTSLSPK DLSSLTNPPE ASVLPPSQEV 480 VTLHPQSTES KTVSSSSKKK PTVDSEIEQP QRDKKIRVEK KPESAKEEAA VESPVQ

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MAELLFNLGM VSCWKRLFAA NLIQLFLRCY FFGFPVCIIF GSTSPVKLWK VLGLLASENE  60
SLSSKGITQP YFTTLSPVHD FFNSESEGQS CLTSEFSSSR PSPFMLTDSL SPNTMQSIVQ  120
PPKYFLKSGP DMPLSPASHI QHSKSTFQRS SVFCTSLYLS SSSSSETNRQ LGNLPFLPHP  180
SAHAHSLSAI DSTKSPLLFT DDISNPYDEE HSDCLMKDFV NFPGDASRSS FHGMTCASDN  240
LVLADQLELQ FLSDELDIAI TDHGENPRVD EIYETPEASS NPAIGSTCNL NVASVKPSAD  300
APSSHPSPGT AAVHKPRMRW TPELHESFVE AIIKLGGAEK ATPKGVLKLM NVEGLTIYHV  360
KSHLQKYRIA KYLPDKKEEK KASCSEEKKA ASSSTESDNQ KKGMTQITEA LRMQMEVQKQ  420
LHEQLEVQRA LQLRIEEHAR YLQKILEEQQ KAGGTSLSPK DLSSLTNPPE ASVLPPSQEV  480
VTLHPQSTES KTVSSSSKKK PTVDSEIEQP QRDKKIRVEK KPESAKEEAA VESPVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-27	315	372	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30169.m006598

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571261.1	0.0	myb family transcription factor PHL6 isoform X2
Swissprot	Q949U2	1e-135	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	B9RHS2	0.0	B9RHS2_RICCO; Transcription factor, putative
STRING	XP_002513291.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-108	G2-like family protein

Link Out ? help Back to Top
Phytozome	30169.m006598

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]