PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006375
Common NameLOC8272649, RCOM_1576560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 674aa    MW: 76126.6 Da    PI: 10.3635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006375genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.3e-122274248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++W t E++ll++av+++G+++W++Ia +++        +t  +ck+++++++
    30169.m006375 22 QPWGTLEELLLACAVNRHGTKSWDSIAMEVQnrtstlPSLTSQNCKDKYNDLK 74
                     79***********************************9***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-71680IPR009057Homeodomain-like
PROSITE profilePS500906.7951674IPR017877Myb-like domain
SMARTSM007179.4E-72076IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-72189IPR009057Homeodomain-like
PfamPF002497.4E-112274IPR001005SANT/Myb domain
CDDcd001672.51E-62374No hitNo description
SMARTSM002971.2E-17183418IPR001487Bromodomain
SuperFamilySSF473701.83E-18313420IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-15320419IPR001487Bromodomain
CDDcd043693.55E-16320413No hitNo description
PfamPF004391.1E-11327398IPR001487Bromodomain
PROSITE profilePS5001412.609328399IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MRRDEKRFHM ARQHHHQETS VQPWGTLEEL LLACAVNRHG TKSWDSIAME VQNRTSTLPS  60
LTSQNCKDKY NDLKRRFMSQ NDTSSIIDQL RKIRVEELRR EVQRRDVSIV SLELKVKRLE  120
EERERSFKEE ADLISERKFS IAGNSTAGGD DSVDERDSRS FNESNSTGQQ KAETTMVRQQ  180
NDDVDRQQKI KVKPNDSENK NEQDPVPSGS DPGGSHKNGN DKKPLAMVKK ESEIKTSQTT  240
GGFGGESNEV GESVGESKRE ERDKEKEKQN NSDVQSSISL SQNKKKRRGS SGGGDRVGSS  300
SGEEPEGGDE VSPAVKSEPL VKLLGIIRSH RLGSTFERRL RSQESERYKN LIRQHIDLQT  360
IQSRLDKGVY SSCIQKFFRD LLLLFNNAII FFRKNSPENL AACELRAVVQ KEMTEKLRKL  420
KTEPVTAKPE PKQTAVSFSK PNKSSSTIVV CGKGNSKKAI PENDIKKGDK KEREVEEKIK  480
LNERQIDSFV KIEEKSIRKK RTKDRSISNH RSSNTSNKNG EVKHQYGGNE LSSHDALEMK  540
VERKGKGSTA RKKQGAASFL KRMKQNSPSE VPENDDEDYD DDNDNDSSEE DEKKDSKGKE  600
EKGRRRGKII DGMTERVTRS SRGRGARENG RGKRGVGRPP RKQAERGESG GGTGKRGREN  660
GGSEVGRTRK RSKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283287KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513430.10.0glutamic acid-rich protein
TrEMBLB9RI610.0B9RI61_RICCO; DNA binding protein, putative
STRINGXP_002513430.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-32DNA-binding bromodomain-containing protein