 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
30169.m006322 |
| Common Name | LOC8272596, RCOM_1574830 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
MYB |
| Protein Properties |
Length: 354aa MW: 39919.2 Da PI: 4.9957 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30169.m006322 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.4 | 1e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl
30169.m006322 16 KGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 52.9 | 8.2e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
30169.m006322 69 RGNFTKEEEDTIITLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MGKGRAPCCD KSQVKKGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60
NYLRPDVKRG NFTKEEEDTI ITLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLSF 120
TDKDSDNRDE SKESLTTTSS SSSSSSTIMS CGKRVPDHDH DDQWNHGSVT KRTRVLDTIP 180
AGEAKEFPSS STSSNNSNVT NYSQVDDSKQ DDQIFNFSGP CDIVQNILEE VNKPEIDQDV 240
AVEIPFESDL DFWNMLDGLN SSLSMTNSIE SSCCQRSSNL GDAYKGGDEN KKWLRYLENE 300
LGLEEVTTKD GSPETLLDQA GIEEPLVTET FQYEIPVKPE VNPEVGYYHL WPSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 4e-26 | 16 | 124 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 4e-26 | 16 | 124 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
