PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30152.m002405
Common NameRCOM_1526050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 432aa    MW: 47900.8 Da    PI: 6.5132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30152.m002405genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11362407655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L++l P+     +k  + a++L +AveYIk+Lq
  30152.m002405 362 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTADMLDLAVEYIKDLQ 407
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.481356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-15359420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11360411No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14361418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MHSVVGGFQG SEEEEEMSLL YSTSFKHQEG EFRKNQEFMD LNHHHCNQDP LHHNSGLMRY  60
RSAPGSFLDS LINGTTSGGG NECQDYRSFR SSSPEMETIL SRFMSTCNGS GDSNSQNLQE  120
YGERPEMKQE MEDPQMVYQS SAVNNLANNG NSVDISNSVD SSFNVMNPMA MENSLPARKF  180
SAVNGSNLVR QHSSPAGFFS NLGVDNNGFT ITKEVGGFQV SNGLNGESNP STSRLGNHLN  240
FSSGQRLLPQ IAETGDENPG ASSPEGSIGK RQYMNFANDS WDDSSSNDFK RLRDNDGSVY  300
SSLNILENQS GNSGNRITSL THHLSLPKTA GEMATVEKFL QFQGSVPCKI RAKRGFATHP  360
RSIAERVRRT RISERMRKLQ DLFPNMDKQT NTADMLDLAV EYIKDLQKQV KTLKDTKAKC  420
TCPSKQKIYD SA
Cis-element ? help Back to Top
SourceLink
PlantRegMap30152.m002405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513187.20.0transcription factor bHLH130 isoform X1
TrEMBLB9RHG80.0B9RHG8_RICCO; DNA binding protein, putative
STRINGXP_002513187.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.14e-67bHLH family protein