PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014337
Common NameRCOM_1502380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 333aa    MW: 36136 Da    PI: 10.0089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014337genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-1495140247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++++  +lG+g+W+ I++ + ++Rt+ q+ s+ qky
    30147.m014337  95 KPWTEEEHRIFLEGLDKLGKGDWRGISKNFVTTRTPTQVASHAQKY 140
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565823IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.1189145IPR017930Myb domain
SuperFamilySSF466891.1E-1790145IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-1892144IPR006447Myb domain, plants
SMARTSM007176.4E-1293143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1293139IPR009057Homeodomain-like
PfamPF002491.9E-1295140IPR001005SANT/Myb domain
CDDcd001676.92E-1096141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVKELAARKC SHCGHNGHNS RTCSGKGGGC LKLFGVKIIE KQEKPIQRSV SLGNLDSLPD  60
TGDADHHDHA DDGYMSDGYI DSKRCKAAHK RKKGKPWTEE EHRIFLEGLD KLGKGDWRGI  120
SKNFVTTRTP TQVASHAQKY FLRQSAADKK KRRSSLFDMT LRESVLASQP QELSIFPAST  180
SSQATTSSAL PLKKTTEVQS NVITRAQVIN KFPHLFLDNP VPMANPSVVP IAVSSYAGIP  240
YMLGFPSNRQ SYLAGKNIQA APFLHMVNYN CSGLGYPFTS KSPGSFTTCA PIPTHPSGIP  300
TPRSFPEGPS SKIGSPPQSP QGAFQASEPI SAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578787.10.0probable transcription factor At5g61620
TrEMBLB9R9Z40.0B9R9Z4_RICCO; Uncharacterized protein
STRINGXP_002511019.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-63MYB_related family protein