PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014242
Common NameRCOM_1500710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 284aa    MW: 31766.9 Da    PI: 9.4396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014242genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015727323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++C+++F +   +  H+r+H
  30147.m014242  7 CKICNRRFANGKAMGGHMRSH 27
                   *******************99 PP
2zf-C2H211.10.0013157179123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k F++   L  H  +H
  30147.m014242 157 YKCKTCKKEFRSYQALGGHKASH 179
                    9***********99998888877 PP
3zf-C2H212.70.0004213235123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kCp C+k+F +   L  H ++H
  30147.m014242 213 FKCPFCDKMFDSGQALGGHKKVH 235
                    89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785532IPR007087Zinc finger, C2H2
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-8629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139124.1E-12157181IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-7157179No hitNo description
SMARTSM003550.054157179IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325157184IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-7208235No hitNo description
PfamPF139122.5E-7213235IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034213235IPR007087Zinc finger, C2H2
SMARTSM003550.014213235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEKNRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIIK VQYPSPIKSL SPSPSSSSSL  60
NYSFTKNPIQ SYRSINHELP FMSSNPAAAS NDDGESETDS PKNNPTRRRS KRRRKSIEKR  120
IPIKQVYEYM EEVESENEEE EDDESFDAIP MRSKGKYKCK TCKKEFRSYQ ALGGHKASHK  180
KIKTHVKVEH EEGSGSGSGV GGNCVTVVDH KMFKCPFCDK MFDSGQALGG HKKVHFSYLG  240
NAKMSAKSSH DLLDLNLPAP EDDGEVSQAE DSTICNAKAY HLRN
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578908.11e-163zinc finger protein ZAT9
TrEMBLB9R9U70.0B9R9U7_RICCO; Zinc finger protein, putative
STRINGXP_002510972.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-15C2H2-like zinc finger protein