PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014069
Common NameLOC8258178, RCOM_1513670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35789.3 Da    PI: 4.3836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014069genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.4e-1991144356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  30147.m014069  91 KKRRLTVDQVQFLEKSFEVENKLEPERKLQLAKDLGLQPRQVAIWFQNRRARWK 144
                    56689************************************************9 PP
2HD-ZIP_I/II128.13.8e-4190181192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ ++L +e+++L++e++
  30147.m014069  90 EKKRRLTVDQVQFLEKSFEVENKLEPERKLQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQTSYNSLKADYDALLQEKDRLKAEVN 181
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2071148IPR009057Homeodomain-like
PROSITE profilePS5007117.39486146IPR001356Homeobox domain
SMARTSM003893.5E-1989150IPR001356Homeobox domain
CDDcd000861.14E-1791147No hitNo description
PfamPF000461.3E-1691144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1993153IPR009057Homeodomain-like
PRINTSPR000311.3E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5126142IPR000047Helix-turn-helix motif
PfamPF021831.0E-16146187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MANASAGSGA GGSGSNFSVL LQSQRGACAA SQPLDAFFLS GSSPSFLGSR SMVSFEDVHQ  60
VNGSTRPFFS SFDHEENADD DLDEYFHQPE KKRRLTVDQV QFLEKSFEVE NKLEPERKLQ  120
LAKDLGLQPR QVAIWFQNRR ARWKTKQMEK DYDVLQTSYN SLKADYDALL QEKDRLKAEV  180
NLLTDKLLLK EKEKVNSEVS DKDALSQELS KKPIGDSASE VEVSKASTVA FKQEDISSAK  240
SDIFDSDSPH YTDGVHSSLL EAGDSSYVFE PDQSDVSQDE EDNLSKSLLP PYVFPKLEEA  300
DYSDPPASFE DHAFWCWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511518.10.0homeobox-leucine zipper protein HAT5
TrEMBLB9R9430.0B9R943_RICCO; Homeobox protein, putative
STRINGXP_002511518.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1