PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30147.m014028

Common Name

LOC8258138, RCOM_1512870

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 319aa MW: 34555.5 Da PI: 9.702

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30147.m014028	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.7	3e-14	108	152	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky 30147.m014028 108 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 152 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.486	101	157	IPR017930	Myb domain
SuperFamily	SSF46689	5.23E-17	103	158	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-17	104	155	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	105	155	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	107	152	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-11	108	152	IPR001005	SANT/Myb domain
CDD	cd00167	1.96E-9	108	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAGTCATEDG GGGIGGAGAG EIMLFGVRVV VDSMRKSVSL NNLSQYEQPQ DFNNNNSSSS 60 SNNNNNKHVT NSNSKKDKDD MAASGYASAD DAVPHSSNAR GERKRGVPWT EEEHKLFLLG 120 LQKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDTVTAFP 180 MEEEQARRQD NSSSPQSHPL PPPLPETSNF SVMSMPAFSM TSSPVVLPIP IETPMQNLSL 240 LQANSSTTLI RPIAVIPAPP TSGISDINLN LKASTDSSPN LSLKLSLPSD QRESPSSTRY 300 SAFQVMPSFN NGDGIITVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30147.m014028

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002511478.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	4e-76	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	B9R903	0.0	B9R903_RICCO; DNA binding protein, putative
STRING	XP_002511478.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-54	MYB_related family protein

Link Out ? help Back to Top
Phytozome	30147.m014028
Entrez Gene	8258138

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]