PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013968
Common NameRCOM_1510870
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 173aa    MW: 19435.6 Da    PI: 10.4497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013968genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.4e-111565655
                   HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   + +Er+RR +++   ++L +l+P+   k ++  ls  + L +A  YIk+L+
  30147.m013968 15 KTVERNRRIHMKGLCFKLASLIPShHLKHSKDTLSQQDQLDHAAAYIKHLK 65
                   679*********************654555555****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.44E-5869No hitNo description
PROSITE profilePS508889.978964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-111186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-101482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-71564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKKTNSTGSP KLDRKTVERN RRIHMKGLCF KLASLIPSHH LKHSKDTLSQ QDQLDHAAAY  60
IKHLKERIEK LKKMKEQAMR SLATNSTNNN ALDATTMGSR LPMIELRDLG SSIEVILISG  120
LKKNFMLYEV ITIVEEEGAE VVSASFSTVG DKVFHIIHAQ VKISRVGVET SRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579413.11e-124transcription factor bHLH162
TrEMBLB9RB431e-123B9RB43_RICCO; DNA binding protein, putative
STRINGXP_002511418.11e-124(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-23bHLH family protein