![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30147.m013964 | ||||||||
Common Name | RCOM_1510830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9941.98 Da PI: 8.4918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.2e-08 | 52 | 80 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 rg+WT+ Ed+ll d++ +G g W+ + + 30147.m013964 52 RGPWTAVEDKLLTDYISIHGEGKWSNVVK 80 89**********************98865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 44 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-8 | 45 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.858 | 47 | 88 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.4E-6 | 52 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-5 | 54 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 88 aa Download sequence Send to blast |
MGHFGQHIYG SEVNPSSSSQ LRFSSFNKAA EQRETETEMR RTPRCSKDGL NRGPWTAVED 60 KLLTDYISIH GEGKWSNVVK NTGLFYSS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30147.m013964 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025013821.1 | 4e-26 | myb-related protein 340-like | ||||
TrEMBL | B9RB39 | 6e-60 | B9RB39_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002511414.1 | 9e-61 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22003 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28110.1 | 5e-12 | myb domain protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30147.m013964 |