PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30146.m003524
Common NameLOC8273796, RCOM_1491210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 338aa    MW: 37203 Da    PI: 6.6972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30146.m003524genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.4e-17233267135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  30146.m003524 233 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 267
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-7919319IPR016679Transcription factor, GATA, plant
SMARTSM004017.1E-16227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.319227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-13231265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.71E-13231290No hitNo description
CDDcd002021.43E-12232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003208.3E-15233267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAPEFFIGG YYSGGAASTA AEFLPEKRMS DQKNGDHFAV DDLLDFPNDD DAAAAALMND  60
GFFDNITSKN CTTTTDNSST TFTSNDSSNS SISGKHFGYQ SFADSYFSSE LCVPYDDLAE  120
LEWLSNFVED SFSTEQNLQV NNFHILSGSK PPTPASSSSE SHPEPSSARN PNNPMFQPET  180
PLPGKARSKR SRAAPCDWST RLLHLSSPTT KVSSKKQGNV DMNSGMDAPV RKCLHCAAEK  240
TPQWRTGPMG PKTLCNACGV RYKSGRLVAE YRPAASPTFV SAKHSNSHRK VLELRRQKEL  300
QRAQQEQYLH QSSIFGVTNG GDDFLIHHHS GPNFRHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30146.m003524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515981.10.0GATA transcription factor 9
SwissprotO826328e-82GATA9_ARATH; GATA transcription factor 9
TrEMBLB9RQG20.0B9RQG2_RICCO; GATA transcription factor
STRINGXP_002515981.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]