PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30146.m003520
Common NameLOC8273792, RCOM_1491170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92568 Da    PI: 6.4665
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30146.m003520genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-171876357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++++++ps  +r++  +++    +++ +q+kvWFqNrR +ek+
  30146.m003520 18 KYVRYTPEQVEALERLYHECPKPSSIRRQQFIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                   5679*****************************************************97 PP
2START181.45.3e-571623702205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +
  30146.m003520 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLY 256
                    789*******************************************************.8888888888****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  30146.m003520 257 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 352
                    ******************************************9988899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++a+l+++++
  30146.m003520 353 STVLAQKTTMAALRQLRQ 370
                    **************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1111377IPR001356Homeobox domain
SMARTSM003895.7E-141581IPR001356Homeobox domain
SuperFamilySSF466899.41E-161781IPR009057Homeodomain-like
CDDcd000862.34E-151878No hitNo description
PfamPF000463.2E-151976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-182076IPR009057Homeodomain-like
CDDcd146861.19E-670109No hitNo description
PROSITE profilePS5084825.559152367IPR002913START domain
CDDcd088751.81E-80156372No hitNo description
SMARTSM002343.3E-42161371IPR002913START domain
Gene3DG3DSA:3.30.530.209.4E-24161368IPR023393START-like domain
SuperFamilySSF559611.92E-38161373No hitNo description
PfamPF018521.9E-54162370IPR002913START domain
SuperFamilySSF559615.71E-5398493No hitNo description
SuperFamilySSF559615.71E-5522595No hitNo description
PfamPF086706.1E-53696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMSCKDGKQ PANLDNGKYV RYTPEQVEAL ERLYHECPKP SSIRRQQFIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
HTQNTTLATK DTSCDSVVTS GQHHLTPQHQ PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCTGVAARA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVICER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRQLRQ IAQEASQSNV TNWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSMMGNDG  420
MDDVTILVNS SPEKLMGLNL SFSNGFPAVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNIDAYS AAAIKVGPCT LPGTRIGSFG GQVILPLAHT IEHEEFLEVI KLEGAGHSPE  540
DPIMPRDMFL LQLCSGMDEN AVGTCAELIF APIDASFADD APLLPSGFRI IPLDSAKEAS  600
SPNRTLDLAS ALEIGPAGNK SSTDYSSNSG CMRSVMTIAF EFAFESHMQE HVASMARQYV  660
RSIISSVQRV ALALSPSHSG SHAGLRTPLG TPEAQTLARW ICQSYRCYLG VELLKSSSEG  720
GESILKTLWH HSDAIMCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDHGRKT  780
LCSEFPQIMQ QGFACLQGGI CLSSMGRPVS YERAVAWKVL NEEENAHCIC FMFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30146.m003520
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515977.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLB9RQF80.0B9RQF8_RICCO; DNA binding protein, putative
STRINGXP_002515977.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]