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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
30138.m004082 |
| Common Name | RCOM_1472910 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family |
MYB |
| Protein Properties |
Length: 332aa MW: 37127.4 Da PI: 6.51 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30138.m004082 | genome | JCVI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.4 | 1.5e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl
30138.m004082 16 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 63
79******************************99************97 PP
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| 2 | Myb_DNA-binding | 49 | 1.4e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l
30138.m004082 69 RGNFTDHEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 114
89********************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
KDMGRPPCCE KIGVKKGPWT PEEDIILVSY IQEHGPGNWR SVPTNTGLLR CSKSCRLRWT 60
NYLRPGIKRG NFTDHEEKMI VHLQALLGNR WAAIASYLPQ RTDNDIKNYW NTHLKKKLTE 120
LKDGQDLDRL SVSQPKGQWE RRLQTDIHLA KQALCEALSL DKPTTPLTHL KPSVATTGAN 180
GASNLIIRPY QAQESNTSTA YASSAENIAR LLENWMKNSP RQVLTAENSS SSTEGAHSTT 240
IPSSQGFNLL FSFNSSSNSD ASQSVDENAN LTPETSLFQD ESKSDMEDNH HNHHLQQVPL 300
SLLEKWLFDE GAVQGHDDLV NISLEETAIG LF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 3e-25 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 4e-25 | 16 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 4e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-25 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to DNA consensus sequences found in the promoters of genes encoding very-long-chain fatty acid-condensing enzymes involved in cuticular wax biosynthesis (PubMed:21398568). Functions together with MYB94 in the activation of cuticular wax biosynthesis (PubMed:27577115). Involved in drought stress response through abscisic acid (ABA) signaling. Mediates ABA signals that enhance plant resistance to drought by reducing stomatal opening. Mediates ABA-auxin cross-talk to regulate lateral root growth under drought stress conditions (PubMed:19625633). Involved in the regulation of ABA biosynthesis and ABA-dependent seed dormancy state. Binds to the promoters of NCED2 and NCED6, which are enzymes catalyzing the first step of ABA biosynthesis (PubMed:25616734). Regulates seed germination by controlling the expression of ABI4, a repressor of lipid breakdown during seed germination (PubMed:25869652). Binds to the promoter of LTP3 and transactivates LTP3 gene in response to drought stress and freezing (PubMed:23404903). Involved in cold stress response. Binds directly to the promoters of heptahelical protein (HHP) genes in response to cold stress. HHPs modulate the expression of SCRM/ICE1, SCRM2/ICE2 and CAMTA3, which are upstream regulators of cold-responsive C-repeat-binding factors (CBFs) (PubMed:25912720). Involved in defense responses against the bacterial pathogen Pseudomonas syringae. May act as a molecular link that mediates cross-talks between ABA and salicylate (PubMed:20149112). Involved in a crosstalk between the circadian clock and ABA signaling. Binds directly to the promoter of APRR1/TOC1 to activate its expression (PubMed:26725725). {ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:20149112, ECO:0000269|PubMed:21398568, ECO:0000269|PubMed:23404903, ECO:0000269|PubMed:25616734, ECO:0000269|PubMed:25869652, ECO:0000269|PubMed:25912720, ECO:0000269|PubMed:26725725, ECO:0000269|PubMed:27577115}. |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA) (PubMed:19625633). Induced by infection with the cauliflower mosaic virus (CaMV) (PubMed:10226370). Induced by cold stress (PubMed:25912720). {ECO:0000269|PubMed:10226370, ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:25912720}. |
| Publications
? help Back to Top |
- Geri C,Cecchini E,Giannakou ME,Covey SN,Milner JJ
Altered patterns of gene expression in Arabidopsis elicited by cauliflower mosaic virus (CaMV) infection and by a CaMV gene VI transgene.
Mol. Plant Microbe Interact., 1999. 12(5): p. 377-84
[PMID:10226370] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
Expression patterns of myb genes from Antirrhinum flowers.
Plant Cell, 1991. 3(2): p. 115-25
[PMID:1840903] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee HG,Seo PJ
The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
Plant J., 2015. 82(6): p. 962-77
[PMID:25912720] - Lee HG,Mas P,Seo PJ
MYB96 shapes the circadian gating of ABA signaling in Arabidopsis.
Sci Rep, 2016. 6: p. 17754
[PMID:26725725] - Cui F, et al.
Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
Mol Plant, 2016. 9(6): p. 926-38
[PMID:27060495] - Lee HG,Choi YR,Seo PJ
Increased STM expression is associated with drought tolerance in Arabidopsis.
J. Plant Physiol., 2016. 201: p. 79-84
[PMID:27448723] - Lee SB,Kim HU,Suh MC
MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
Plant Cell Physiol., 2016. 57(11): p. 2300-2311
[PMID:27577115] - Lee HG,Seo PJ
The Arabidopsis MIEL1 E3 ligase negatively regulates ABA signalling by promoting protein turnover of MYB96.
Nat Commun, 2016. 7: p. 12525
[PMID:27615387] - Li P, et al.
The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
Physiol Plant, 2017. 159(4): p. 416-432
[PMID:27747895] - Lee HG,Kim J,Suh MC,Seo PJ
The MIEL1 E3 Ubiquitin Ligase Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Stems.
Plant Cell Physiol., 2017. 58(7): p. 1249-1259
[PMID:28838126] - Lee HG,Kim H,Suh MC,Kim HU,Seo PJ
The MYB96 Transcription Factor Regulates Triacylglycerol Accumulation by Activating DGAT1 and PDAT1 Expression in Arabidopsis Seeds.
Plant Cell Physiol., 2018. 59(7): p. 1432-1442
[PMID:29660088] - Lee HG,Seo PJ
MYB96 recruits the HDA15 protein to suppress negative regulators of ABA signaling in Arabidopsis.
Nat Commun, 2019. 10(1): p. 1713
[PMID:30979883]
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