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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
30138.m004065 |
| Common Name | LOC8263419, RCOM_1471640 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family |
Dof |
| Protein Properties |
Length: 488aa MW: 53035.1 Da PI: 6.5124 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30138.m004065 | genome | JCVI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 126.1 | 1.1e-39 | 128 | 188 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s
30138.m004065 128 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 188
7899******************************************************976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MQENTTKDPA IRLFGKKIPL TADLDPPVIP GQELPSLERV AVEEDEEEMK AEKELSAGKV 60
TDTQEEDDED DTPIQDTEES AEPEKLGETD VNPKTPSINE ESAKSKNSKS EKQQNDGTNT 120
QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG 180
RRKNKNSASH YRHITISEAL QAARIEAPNG TCNNPALRPN GRVLSFGLDT PICDSMASVL 240
SLADKKVLNS SRNGFHHFED KMTRVPCKGR ENGGDDCSGG SSVTVSNSME EGRRTGAQEP 300
FMPSINGFAS PITCLSGVPW AYPWNSALPP PPAFCPPPPG FPMSFYPPIW NCGVAGGWNI 360
PLLSPQSSSS SSNQKASSSP NSPTLGKHSR DGDALKPDDL GKEEPGKRKN GCVLVPKTLR 420
IDDPNEAAKS SIWATLGIKN ESFNGGGLLK ALQPKSDEKN HIPQTSSSSV LRANPAALSR 480
SINFHEST
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Renau-Morata B, et al.
Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions.
Front Plant Sci, 2017. 8: p. 660
[PMID:28515731] - Henriques R, et al.
The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
New Phytol., 2017. 216(3): p. 854-867
[PMID:28758689]
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