PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m004008
Common NameRCOM_1470470
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 557aa    MW: 61855.5 Da    PI: 8.2552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m004008genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071109128221
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                    +C+ Cg++F ++  L  H++
  30138.m004008 109 SCKECGRVFQSWKALFGHMK 128
                    6******************7 PP
2zf-C2H211.20.0012469491123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp C k+F++   L  H r+H
  30138.m004008 469 HECPVCFKVFPSGQALGGHKRSH 491
                    78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-4832IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.91E-9832No hitNo description
PROSITE profilePS501579.7231032IPR007087Zinc finger, C2H2
PfamPF139121.8E-51033IPR007087Zinc finger, C2H2
SMARTSM003550.281032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.91E-9103130No hitNo description
PROSITE profilePS501579.785108135IPR007087Zinc finger, C2H2
SMARTSM003550.017108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
PfamPF139127.6E-8110131IPR007087Zinc finger, C2H2
PfamPF139122.9E-12380405IPR007087Zinc finger, C2H2
SuperFamilySSF576672.84E-7381403No hitNo description
PROSITE profilePS5015710.388381408IPR007087Zinc finger, C2H2
SMARTSM003550.06381403IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
SuperFamilySSF576672.84E-7464491No hitNo description
PfamPF139121.5E-11469491IPR007087Zinc finger, C2H2
SMARTSM003550.087469491IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995469491IPR007087Zinc finger, C2H2
PROSITE patternPS000280471491IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEEEQELKQH VCKFCSKSFS CGRSLGGHMR SHMINDISAQ ADGTKLTKKK LPSLTNYNNN  60
GADNNNKNNN TTTISADITG YGLRENPKKT WRIVADHHSS EDTSLVDKSC KECGRVFQSW  120
KALFGHMKCH PSLEKEKVKA SNINNSLEEE QQDSWTSANN QKLVMDSQSD NETAAPNRRK  180
RSKRRTRYMG GTANSSSLSF ANNINASSSV SEIDQQEQEE VAMCLMMLSR DVGQWGSGLN  240
SVAESSDNSS VFLENNNLVS SRNEVKASVC NGTETLKVKN FGDKKNGKLE DDDLRVESRK  300
SEFSVSGISR KGFTKNDKVK KSPADDERAA ENSAVELGKN LSKETDMISS KRNSNKRKYD  360
DSFHPELKSD YLKNSDRSSR FECTTCNKVF HSYQALGGHR ASHKKTKGCF ASRSDSNENS  420
IETELSPDPT ADSKLIIKSI KNEISVDQLA IERDNKAETS YGAKKSKGHE CPVCFKVFPS  480
GQALGGHKRS HLLAGTDQGK NDRSISVQES MPPPIRDFLD LNLPAPAEEE SNGLVGFNPW  540
WITSNHKHEQ LVGLISN
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m004008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012361.10.0putative uncharacterized protein DDB_G0293878
TrEMBLB9RLS00.0B9RLS0_RICCO; Uncharacterized protein
STRINGXP_002514689.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-51C2H2-like zinc finger protein