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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30138.m003899 | ||||||||
Common Name | LOC8264660, RCOM_1466780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38294.2 Da PI: 6.593 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.3e-16 | 53 | 102 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq 30138.m003899 53 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 102 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-18 | 49 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-23 | 49 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.044 | 51 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-14 | 53 | 106 | No hit | No description |
Pfam | PF00010 | 2.4E-13 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-12 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MRGKRNQNQD EEEYEEEDFG SRKDGLTSNV TATNNNTNTN KDGKNSDKAN AIRSKHSVTE 60 QRRRSKINER FQILRDLIPH SDQKRDTASF LLEVIEYVQY LQEKVQKYEG SYQGWSSEPT 120 KLMPWRNSHW RVQSFIGHPQ PIKNGSGPGS TIPGKFDENT IAINPTMLTG AQNQVESDPS 180 RDVTCKAMDR HPEVANKVLL HPVSLQTTIP IPVHSDGAIA HPVHSDGAIA HPLQQPVTDA 240 QSADFPITSG ALNQQEELTI EGGTISISSV YSQGLLNNLT RSLQSAGVDL SDANISVQID 300 LGKRANRGLA SGTSTTKDPP LSNNQVAAHL RDVSSGEDSD QAQKRLKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30138.m003899 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514584.1 | 0.0 | transcription factor BIM2 | ||||
Swissprot | Q9CAA4 | 1e-111 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | B9RLG5 | 0.0 | B9RLG5_RICCO; Uncharacterized protein | ||||
STRING | XP_002514584.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-104 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | 30138.m003899 |
Entrez Gene | 8264660 |
Publications ? help Back to Top | |||
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