PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m003881
Common NameLOC8264642, RCOM_1466300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 566aa    MW: 60713.8 Da    PI: 5.377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m003881genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09380428355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  30138.m003881 380 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 428
                    58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.34E-11375432No hitNo description
SuperFamilySSF474597.46E-17375446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485377427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16378444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6380428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10383433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDMSDMDKLE LEKRGDNPIN YHSPANMTSD WRFGSSNITN TSLGLVPTDN QMPVCRGDLL  60
GASSCSTASM VDSFGPGLWD HSTNSLNLGF CDINVQNHPS TSNTIGHRKS GPTSLRVGTD  120
KALQMGWNPP SSMLKGGIFL PSAPGVLPQS LSQFPADSAF IERAARFSCF NGGNFSDMMN  180
PFGIPESMGL YSRSGGMMQG PQEVFAASGL KTVTGGQGQN NVTIVGETSK DASMSIEHVA  240
IEGPLKNERK SDSLVRSNDE AKQGAGGSGD ESEEAEFSGG GGQEEASTLE GNGMELSAKS  300
LGLKKRKRNG QDIELDQAKG NLQSVEAAKD NVEAQQKGDQ TPTSTPNKTS GKQGKQGSQA  360
SDPPKEEYIH VRARRGQATN SHSLAERVRR EKISERMKFL QDLVPGCSKV TGKAVMLDEI  420
INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE GLLAKDILHS RAVPSSTLAF SPDMIMAYPP  480
FNTSQPGLIQ ASFPGMESHS DVLRRTISSQ LTPLSGVFKE PTQLPNAWDD ELHNVVQMGY  540
GTGTTQDSQD VNAGSLPAAG QMKAEL
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m003881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514566.10.0transcription factor bHLH49 isoform X1
TrEMBLB9RLE70.0B9RLE7_RICCO; Uncharacterized protein
STRINGXP_002514566.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-139bHLH family protein