PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007263
Common NameLOC8260725, RCOM_1454070
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 295aa    MW: 31443.9 Da    PI: 6.8492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007263genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69e-111155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT e d+ + da + ++ +   +W++Ia+ ++ g+t +++k ++ 
    30131.m007263 11 VWTREQDKAFEDALATYPEDdldRWEKIAADVP-GKTSEEIKFHYE 55
                     7********************************.**********95 PP
2Myb_DNA-binding422.1e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
    30131.m007263 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.227762IPR017884SANT domain
SMARTSM007171.2E-9860IPR001005SANT/Myb domain
SuperFamilySSF466894.74E-111065IPR009057Homeodomain-like
PfamPF002491.6E-81155IPR001005SANT/Myb domain
CDDcd001671.22E-91258No hitNo description
Gene3DG3DSA:1.10.10.603.8E-51255IPR009057Homeodomain-like
PROSITE profilePS5129417.581113170IPR017930Myb domain
SuperFamilySSF466891.22E-16116171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17118168IPR006447Myb domain, plants
SMARTSM007173.2E-10118168IPR001005SANT/Myb domain
CDDcd001678.38E-10121166No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10121164IPR009057Homeodomain-like
PfamPF002492.7E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MTVDEADCSS VWTREQDKAF EDALATYPED DLDRWEKIAA DVPGKTSEEI KFHYELLVED  60
VNQIEAGCVP LPNYSSSEGS TGHAGDEGTS KKGSHLGHHN NEPAHGNKAS RSDQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVGNG DISAPQGPIT GQTNGSAGGG SAGKATKHPP QHPAGSPGVG VYGSPTIGQP  240
IGGPLVSAVG TPVNLPAPAH MAYGIRAPVP GTVVPGAPMN MGPMAYPMPP TTAHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1812801179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007263
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513126.10.0transcription factor SRM1
RefseqXP_015570927.10.0transcription factor SRM1
RefseqXP_015570928.10.0transcription factor SRM1
RefseqXP_015570929.10.0transcription factor SRM1
SwissprotQ9FNN61e-133SRM1_ARATH; Transcription factor SRM1
TrEMBLB9RGH40.0B9RGH4_RICCO; DNA binding protein, putative
STRINGXP_002513126.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-124MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]