 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
30131.m007174 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
Trihelix |
| Protein Properties |
Length: 371aa MW: 41150.4 Da PI: 10.0126 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30131.m007174 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 49.4 | 1.2e-15 | 46 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + ++ s++p++ +l+
30131.m007174 46 EWSEGAVSSLLEAYESKWILRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESATTDA------SSWPLYPRLD 129
5*************************************854444555566679**************9998886......4699999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MDKETNQESP SLPSNSNKEE HPRKPLGSSG GGAGFSGGGD RLKRDEWSEG AVSSLLEAYE 60
SKWILRNRAK LKGHDWEDVA RYVSSRANCT KSPKTQTQCK NKIESMKKRY RSESATTDAS 120
SWPLYPRLDL LLRGNAAAAA ATAAAAVQPL NQPQQPTPSN HPPLLLLEPC HVHVPQPQPX 180
XXXXXXXXXX XXXXXXXXXX XXXXPPPPPP PPPPPPPPAA AHPVIIMTAQ NSYGSNGVDK 240
GAKEDGKLSD HVSDKNAMDT DSSTPALYSD KEKLRAKKMK MKMDKKKRRR REEWEIADSI 300
RWLAEVVVRS EQARMETMRE VEKMRMEAEA KRGEMDLKRT EIIANTQLEI AKLFAGVGGK 360
GVDSSLRIGR S
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 276 | 287 | KKMKMKMDKKKR |
| 2 | 284 | 289 | KKKRRR |
| 3 | 284 | 290 | KKKRRRR |
| 4 | 285 | 290 | KKRRRR |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 9e-57 | sequence-specific DNA binding transcription factors |
