PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m007163 | ||||||||
Common Name | LOC8270850, RCOM_1451970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 463aa MW: 51139.1 Da PI: 5.717 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30 | 1.1e-09 | 177 | 218 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L 30131.m007163 177 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 218 5888*************************9777777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.8E-8 | 174 | 237 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 176 | 220 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.39E-22 | 178 | 230 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-7 | 178 | 221 | No hit | No description |
Pfam | PF00170 | 9.0E-7 | 178 | 218 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-7 | 179 | 222 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 181 | 196 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.1E-33 | 260 | 335 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0009627 | Biological Process | systemic acquired resistance | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MGSKVGVEDE KEANGMPSFE LPISNALGIE GSTIHSYRVS DFGAFDQSVA FRLEDAVDLS 60 TNTVFNSAKA NNQADTSDPL HIGSFDKLTA SFNINPSPAQ LESQRLPLEK GQQLNIIALS 120 SGNTENWEES NMADGSPRTD LSTDGDTDDK NQRFDRGLST AIAASDSSDR SKDKMDQKTL 180 RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQAHSMSG 240 NGAMAFDVEY ARWLEEQNRQ INELRSAVNS HAGDAELRII IDGVMAHYDE IFRLKSNAAK 300 ADVFHLLSGM WKTPAERCFL WLGGFRSSEL LKLLVNQLEP LTEQQLVGLG NLQQSSQQAE 360 DALSQGMEAL QQSLAETLSS GSLGSSGSSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR 420 QQTLQQMHRI LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00349 | DAP | Transfer from AT3G12250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m007163 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002513027.1 | 0.0 | transcription factor TGA6 | ||||
Swissprot | Q41558 | 0.0 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
Swissprot | Q6IVC2 | 0.0 | TGAL1_ORYSJ; Transcription factor TGAL1 | ||||
TrEMBL | B9RG75 | 0.0 | B9RG75_RICCO; Transcription factor HBP-1b(C1), putative | ||||
STRING | XP_002513027.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-160 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | 30131.m007163 |
Entrez Gene | 8270850 |
Publications ? help Back to Top | |||
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