PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007089
Common NameLOC8284332, RCOM_1448840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 677aa    MW: 74151.5 Da    PI: 6.0219
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007089genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-094184551954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  30131.m007089 418 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 455
                    664459******************************88 PP
2BELL127.35.4e-41280351172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL dai++qi
  30131.m007089 280 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLLDAISGQI 351
                    79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-67203349IPR006563POX domain
PfamPF075268.3E-52209348IPR006563POX domain
PROSITE profilePS5007112.163396459IPR001356Homeobox domain
CDDcd000864.43E-13399460No hitNo description
SMARTSM003891.0E-9399463IPR001356Homeobox domain
SuperFamilySSF466892.52E-17400466IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-29402465IPR009057Homeodomain-like
PfamPF059204.6E-18416455IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MATYYASTNN QREAVPMIYM PGSYSEAPVL PGNVMMYMNA GSYSDTLAGN SQQQNNCIEI  60
QSVEASDSTP QQQEILSNLS GSRMGQHDLN AWRDGRNEML VMHSMAGPSS ILLSGQNLQG  120
QGLSLSLGTQ IPSGIQMPSI SYRNPSPGLA SFLSPTPSIM GEGGGRNSSS RDEEPKHAEY  180
LPPGFSGGNQ DSNKGALSPY GITSVARTIP SSKYLKAAQQ LLDEVVSVRK ALKQPDKEKN  240
QNRDEHGMNS SNEGDGKSKD GSSNPQESTN NSPNELSHGE RQELQNKLTK LLSMLDEVDR  300
RYKQYYHQMQ IVVSSFDVIA GCGAAKPYTA LALQTISRHF RCLLDAISGQ IRATRKSLGE  360
QETSENGKGV GITRLRYVDQ QLRQQRALQQ LGMMQQHAWR PQRGLPESSV SILRAWLFEH  420
FLHPYPKDSD KIMLARQTGL TRSQVSNWFI NARVRLWKPM VEEMYKEEIG DVEMDSNSSS  480
ENAARVTKGD MGTSEDREEE MQQSASSVAT ERCSAGPLMD SKSVHASDVE MAGSTTRSNF  540
HNIMRGEAIT DYGLLRLREE QRPSMDDCGL FPDAIVHSDG GGNRFMAAAA AAYQMSEVAR  600
FGSGSGVSLT LGLQHCDDGS LPMSATTHHS FVPMRGDDIY GAAASSVGAE TTDFDCLNPG  660
NREHRFSSSH LLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16405462158Homeobox protein Meis1
4xrs_B1e-16405462158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512955.10.0BEL1-like homeodomain protein 6
RefseqXP_015570902.10.0BEL1-like homeodomain protein 6
SwissprotO656851e-144BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLB9RH960.0B9RH96_RICCO; Bel1 homeotic protein, putative
STRINGXP_002512955.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-127BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]