PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007077
Common NameLOC8285747, RCOM_1448120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 1003aa    MW: 110687 Da    PI: 4.4609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007077genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-11853894346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW+++E el++++++q+G++  + I + ++ gRt+ q+k+++ k
    30131.m007077 853 RWSKQETELFYEGIQQFGTD-LSMIQQLFP-GRTRHQIKLKYKK 894
                      9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-29844928No hitNo description
PROSITE profilePS5129310.451849897IPR017884SANT domain
SMARTSM007172.7E-8850898IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-10853900IPR009057Homeodomain-like
CDDcd001673.30E-7853894No hitNo description
Gene3DG3DSA:1.10.10.601.8E-7853894IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MDSDWDPFDD VLPEPALAHA RAGGKFQPRA KPRPKKVASA SISSILPTNA KEKYVPSLPT  60
ALDRKQSAQS VDNVDDILTI PASSSPASST LPGREEHLEK TDENLKCEPL KDLTELVRRS  120
KDLPSADALP LKVVVSDRKT GDSCLSIKKT DSSQLDLDAF AGSICDAAEN KALVDSHTTT  180
SVQSVDVLDK TMGPVGPSFP EQIIESNEPL GDSEVLFSDD SNLKLINLSP NELESKEDMI  240
SKDDHAEVNE MELDLDPFAD ILPPPSISSV RNGGKFQPRA KARPRKGTSE TVAIAASTST  300
MEEQASLVSH VSDNLQPAKF VDAGDGRLRD PVPSSLYSLE ILVSKESLRN DDYKNFGVLL  360
SSDVMSSGLV NSSQLLSTDA VHLGGATRDL HFGLAKSMGE NTDIFSGLEY IHDLVTQSPS  420
STEIPVHSSN EETEGSRFPA QNSVNSSALG ACSVDLPDPV SCNEAAIWTD NRRPEVEEAG  480
VFSNLGRPDN LSESISEYNT RNFQPRQKVQ TGKEKSTVST LPQDAVDSVA SSSNAEFEPS  540
ETMYMDVGSI PTFPSDDVLD YSSMSFSNCI SPDATTSGFL LNEEQINLAE ASRSSDPNVL  600
CQEDLPVEAV KENSKSRRRK SSSLLISSQK FGEASLAGEM GGSGKSSRQL RKRTAAPQLV  660
DEPEDEACDN DGFPSKASSN SIADEEDGDY DYRVDEDNDN EDALENKSRK KRASEKLKKP  720
AADEGKTVRR RKRDTDASEQ LTQQPRKKFS HSTRRKNRLK DLLSMPEDEI DFQRLPVRDI  780
ILLAGYRESL ASKEAKESKN ASTNQSTANS FHGEDSHNEE DTVTSEQSGG HINDQSNILF  840
NYHSFMDKTP TARWSKQETE LFYEGIQQFG TDLSMIQQLF PGRTRHQIKL KYKKEERQHP  900
LRLSDALRNR AKDHSHFEKV IEQLQQVATQ AEQECNRDAS VDVTDEEAEL NPETNQETTK  960
SERYEDVTVE DREGDVNEEV HSPSKYDEDD DDLDIWSSYK SVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615620SRRRKS
2709731KKRASEKLKKPAADEGKTVRRRK
3725731KTVRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30131.m007077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512944.10.0uncharacterized protein LOC8285747 isoform X1
TrEMBLB9RH850.0B9RH85_RICCO; Uncharacterized protein
STRINGXP_002512944.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.19e-44MYB_related family protein