PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30131.m007011 | ||||||||
Common Name | LOC8285288, RCOM_1446140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20329.5 Da PI: 6.785 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F ++ L H++ H 30131.m007011 54 FQCLYCPRKFYTSQALGGHQNAH 76 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.38E-6 | 51 | 81 | No hit | No description |
PROSITE profile | PS50157 | 10.845 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MADPSIYNFF NQQQNQPQQQ QQQQQQEQLP FPSSRPSRKN PIPQQPPTSS SRLFQCLYCP 60 RKFYTSQALG GHQNAHKRER AAAHRNLSLQ SPPNISAHYF PPDPYMMNHP DAAPFLDDHH 120 HYYCLEPKQT MTDYQFPSPP QVGFCGGSTA SSALNAIDDS LSPVADLNAD PVNLDLTLHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30131.m007011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512878.1 | 1e-129 | zinc finger protein GIS2 | ||||
TrEMBL | B9RH19 | 1e-128 | B9RH19_RICCO; Uncharacterized protein | ||||
STRING | XP_002512878.1 | 1e-128 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15014 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 1e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 30131.m007011 |
Entrez Gene | 8285288 |