PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m009041
Common NameRCOM_1437660
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 477aa    MW: 52912.5 Da    PI: 6.7163
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m009041genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-061151337
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ ++e+ + l+C+ ++  lC  C ++ H+       H
  30128.m009041 11 RVPCDFCSEQIAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                   568***************************99555565556 PP
2zf-B_box21.16.6e-075498341
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                    ++C+++++ +++  C +++  lC++C    H +      H+++p
  30128.m009041 54 SQICDNCSKGPVTVRCGTDNLVLCQECDWDAHGScsvsasHDRTP 98
                   689******99*****************99994488888888877 PP
3CCT62.11.7e-21432472444
            CCT   4 allRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    a++ YkeKrk+R+++K+irYesRKa+A++R+RvKGrFvk++
  30128.m009041 432 AMQHYKEKRKNRRYDKHIRYESRKARADTRKRVKGRFVKAS 472
                    899************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84956IPR000315B-box-type zinc finger
SMARTSM003368.6E-13956IPR000315B-box-type zinc finger
CDDcd000214.65E-71256No hitNo description
PROSITE profilePS501199.4565299IPR000315B-box-type zinc finger
CDDcd000214.22E-55699No hitNo description
SMARTSM003364.25799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.307429471IPR010402CCT domain
PfamPF062039.5E-16432471IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDRPKPQSKE RVPCDFCSEQ IAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
SKGPVTVRCG TDNLVLCQEC DWDAHGSCSV SASHDRTPVE GLSGCPSALE LASIWGFDLE  120
DKNFDESEPL SIDDMVMQIE PSCSWVFNKS SGYQDLIVPN DKGIIFGNMS YGGEMLMGSK  180
RKQSPSCGKD KQVVYKQLME LLKRNLMSAD GGGDSGGNLV PETPIKSGWQ GDNNAEGGDF  240
GNGNHGGVNV IPQQQEVGFT SLLTMPSQMD LKSIARGELS TEDHLMWDNN ASARGTQIWD  300
FNLGQLRTHD ESDQFEIAYG TNGAGFMIKN FGELMKDTSL SNEKLLGDMY RISCPNAHDD  360
MTLFNGPATS ESNNLPIARA SLGSTFGKMK RTCGSKDVEF PQQRIIVRGD SMRTVPPTKA  420
DMEQLAKNRG IAMQHYKEKR KNRRYDKHIR YESRKARADT RKRVKGRFVK ASDAPDD
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m009041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570672.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLB9RFW90.0B9RFW9_RICCO; Uncharacterized protein
STRINGXP_002512638.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-115B-box type zinc finger protein with CCT domain