PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008982
Common NameLOC8274964, RCOM_1436790
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 300aa    MW: 34962.9 Da    PI: 6.8921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008982genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052158182123
                    EEETTTTEEESSHHHHHHHHHH..T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                    + C  C+k ++  +++++H+++  H
  30128.m008982 158 FYCDLCNKQYKLAMEFEVHLSSydH 182
                    78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004435.5E-1661106IPR000467G-patch domain
PROSITE profilePS5017416.61463108IPR000467G-patch domain
PfamPF015851.3E-1565104IPR000467G-patch domain
PfamPF121715.2E-5158185IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDCRWYGSKQ ETVSHDESQQ DRNQDSLIED LAEDFRLPIN HRPTENVDLE NVEQASLDTK  60
LTATNIGFRL LQKMGWKGKG LGKDEQGIIE PIKSGIRDRK LGIGKQEEDD FFTAEENIQR  120
KKLDIEIEET EEHAKKREVL AEREQKIQTE VKEIRKVFYC DLCNKQYKLA MEFEVHLSSY  180
DHNHRKRFKE MREMHGTSSR DDRQKREQQR QEREMARFAQ MADARKQQQQ QQQQQQVEES  240
AQVSNSVRTT TALTEQDKRK VLKFGFSSKG GTSKKSSSSA VKKPKATVAS VFSNNSDEEE
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512582.10.0G patch domain-containing protein 8 isoform X1
RefseqXP_025011926.10.0G patch domain-containing protein 8 isoform X1
TrEMBLB9RFR30.0B9RFR3_RICCO; Nucleic acid binding protein, putative
STRINGXP_002512582.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428