PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008910
Common NameLOC8269822, RCOM_1435170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 327aa    MW: 37056.5 Da    PI: 5.2954
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008910genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-092562892255
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +yp+++e+ +L++ +gL+++q+ +WF N+R ++
  30128.m008910 256 WPYPTEDEKVKLSEITGLDQKQINNWFINQRKRH 289
                    58*****************************885 PP
2ELK36.21.3e-12209230122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    +LK +LlrKYsgyL++L++EF+
  30128.m008910 209 DLKGMLLRKYSGYLSNLRKEFL 230
                    69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-1866110IPR005540KNOX1
PfamPF037908.6E-2068108IPR005540KNOX1
SMARTSM012567.8E-27114165IPR005541KNOX2
PfamPF037911.4E-24118164IPR005541KNOX2
SMARTSM011881.8E-6209230IPR005539ELK domain
PROSITE profilePS5121310.79209229IPR005539ELK domain
PfamPF037891.1E-9209230IPR005539ELK domain
PROSITE profilePS5007112.179229292IPR001356Homeobox domain
SuperFamilySSF466891.11E-19231301IPR009057Homeodomain-like
SMARTSM003897.2E-13231296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27234294IPR009057Homeodomain-like
CDDcd000864.61E-13241293No hitNo description
PfamPF059201.7E-16249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDLYRLDPR ISCSENIVTV DHNFQPANFT ASTSTTHEFR SSVVNLLQFQ AGNHHHAQVS  60
DSDMLGLIKT QIAHHPRYPD LVSAYIECQK VGAPPEMTSL LEEIGRENYS IKGCSGEMGA  120
DPELDEFMES YCEVLHRYKE ELSKPFDEAT TFFSDIESQL SNLCKGTLTK TFHYGSDEAV  180
GTSEEEISCG EIEASESRES CGSRPVDPDL KGMLLRKYSG YLSNLRKEFL KKRKKGKLPK  240
DARMILLDWW NNHYRWPYPT EDEKVKLSEI TGLDQKQINN WFINQRKRHW KPSEDVRYAL  300
MEGVTVGGSI GGAPSYFDSR GGGDGGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224233LRKEFLKKRK
2230234KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512511.10.0homeobox protein knotted-1-like 1
SwissprotQ9FP291e-97KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLB9RFJ20.0B9RFJ2_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002512511.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.17e-81KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]