PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30128.m008883 | ||||||||
Common Name | LOC8269795, RCOM_1434490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GATA | ||||||||
Protein Properties | Length: 151aa MW: 16939.5 Da PI: 10.9839 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.6 | 9.6e-20 | 24 | 57 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+tt+TplWR gp g+k+LCnaCG++yrk++ 30128.m008883 24 CTDCKTTETPLWRAGPAGPKSLCNACGIRYRKTK 57 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.18E-14 | 17 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.6E-17 | 18 | 73 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.835 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.1E-16 | 18 | 75 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 9.62E-14 | 23 | 73 | No hit | No description |
Pfam | PF00320 | 1.1E-17 | 24 | 57 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDLDERKSSC GDDDKSKNDS KKSCTDCKTT ETPLWRAGPA GPKSLCNACG IRYRKTKRDI 60 LSFHKSPFKR RKRPNITATT PSSTSTATTS ATTNEVRNSL KMRLIVVGQS MLFQRSKIVR 120 KQRCQRRRKL GQEEQQAAFS LMALSCGSVF A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30128.m008883 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512484.1 | 1e-108 | GATA transcription factor 15 | ||||
TrEMBL | B9RFG5 | 1e-106 | B9RFG5_RICCO; Uncharacterized protein | ||||
STRING | XP_002512484.1 | 1e-107 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 7e-24 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | 30128.m008883 |
Entrez Gene | 8269795 |