PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008805
Common NameLOC8287065, RCOM_1432490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 513aa    MW: 55641.1 Da    PI: 9.2874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008805genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0598120123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  30128.m008805  98 FVCEICNKGFQRDQNLQLHRRGH 120
                    89*******************88 PP
2zf-C2H213.40.00023174196123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  30128.m008805 174 WKCDKCSKKYAVQSDWKAHAKTC 196
                    58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.86E-797120No hitNo description
Gene3DG3DSA:3.30.160.601.7E-597120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94998120IPR007087Zinc finger, C2H2
SMARTSM003550.01798120IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-598120IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM0035585139169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.86E-7169194No hitNo description
SMARTSM00355150174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSNITGEGRS FSSGNTAGVG EEVQGQQQEL ILNHHLNSIA NSTTTTTTNT AANSNGSTAT  60
QQLQPPPVKK KRNLPGNPDP NAEVIALSPN TLLATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT STEIRKRVYV CPEPSCVHHN PGRALGDLTG IKKHFSRKHG EKKWKCDKCS  180
KKYAVQSDWK AHAKTCGTKE YKCDCGTIFS RRDSFITHRA FCDALTEENN KGNQGLAPNN  240
IGQSLQVQVT NLMSMPINNS NNQNSSEDQS SIMSNFNHVD IKIPLSLPHE LMPTPAKLPS  300
GTLSASSTAS LLGGARTAVS NSSSSSSSLQ LNASSASIFE RKGNLASSAS MSATALLQKA  360
AQMGATASSN NLNYPMTHKS FVITSMAPST FASVQTQNDQ IGSSDGYVSQ FFNANEGMFN  420
GVLDHQDSAL FKIQGQESSN NKSFFGNGGN NQSGLSRFSG DVMTVDFLGV GGSRKRSIHE  480
VQQKPEMEFI GIGHHPLVHF EQQAALEKPV WDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34170240372Zinc finger protein JACKDAW
5b3h_F3e-34170240372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008805
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512409.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-113IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9RF900.0B9RF90_RICCO; Nucleic acid binding protein, putative
STRINGXP_002512409.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]