PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008737
Common NameLOC8285526, RCOM_1430620
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 366aa    MW: 41197.1 Da    PI: 6.8421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008737genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13160211155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  30128.m008737 160 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 211
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.06E-13158215No hitNo description
Gene3DG3DSA:4.10.280.106.7E-14158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-16159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10160211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-10165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MALEAVIYQQ DLFSHPSREL YNLLGGNWSY DHYSLLEREE DKAVYSFDNF LEKQTENSLH  60
GDWGNNSSSS PSMFPHHFNE MLHINPSPDA ANVATGLTNS TTTTTTTTTT TATTITSPAA  120
SELLPDHQHQ LLDSPSIMPA ARAKRRRSRS RKNKEEIENQ RMTHIAVERN RRKQMNEYLS  180
VLRSLMPESY VQRGDQASII GGAINFVKEL EQRLQLLGGH KEIKGKSDHG EHHASNNPLP  240
FSEFFTFPQY STTSTRSDNS VAAANETMSS ATQSTIADIE VTMVESHANL KIRSKRRPKQ  300
LLKVVSGLHT LRLTILHLNV TTTEQIVLYC LSVKVEDDCK LSSVDEIATA VYQMLGRIQQ  360
DYSVMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160171RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512342.10.0transcription factor bHLH94
SwissprotQ9C7T41e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLB9RF230.0B9RF23_RICCO; DNA binding protein, putative
STRINGXP_002512342.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]