PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB

Protein Properties

Length: 161aa MW: 18684.9 Da PI: 10.9156

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30128.m008730	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++++++G g+W +++ + g++R++k+c++rw++yl 30128.m008730 34 KGSWTPEEDDLLRKCIQKYGEGRWCLVPTRAGLRRCRKSCRLRWLNYL 81 799*******************************************97 PP
2	Myb_DNA-binding	49.8	8e-16	87	131	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w++ 30128.m008730 87 RGAFTEDEVDLLIRLHKLLGNR-WTLIACRLP-GRTANDIKNFWNTN 131 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.359	29	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	30	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.91E-28	32	128	IPR009057	Homeodomain-like
SMART	SM00717	6.9E-16	33	83	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-17	34	81	IPR001005	SANT/Myb domain
CDD	cd00167	5.74E-11	36	81	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-23	85	135	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.784	86	136	IPR017930	Myb domain
SMART	SM00717	1.2E-14	86	134	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	87	132	IPR001005	SANT/Myb domain
CDD	cd00167	3.05E-10	89	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MLGWRQAISK LTSLKVASDT NNVCRSLWSS KVRKGSWTPE EDDLLRKCIQ KYGEGRWCLV 60 PTRAGLRRCR KSCRLRWLNY LKPDIKRGAF TEDEVDLLIR LHKLLGNRWT LIACRLPGRT 120 ANDIKNFWNT NLGKKKIVSC KKGDNVKEKT QKTTKIDVIK P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-26	34	135	4	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-25	10	135	30	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-25	10	135	30	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-26	34	135	4	104	C-Myb DNA-Binding Domain
1msf_C	5e-26	34	135	4	104	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30128.m008730

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015570345.1	1e-112	transcription factor MYB114
Swissprot	Q9FNV9	7e-55	MY113_ARATH; Transcription factor MYB113
TrEMBL	B9RF16	1e-112	B9RF16_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002512335.1	1e-112	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-57	myb domain protein 113

Link Out ? help Back to Top
Phytozome	30128.m008730

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]