PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008617
Common NameRCOM_1427880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CPP
Protein Properties Length: 729aa    MW: 80004.3 Da    PI: 6.3484
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008617genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.41.9e-15448487241
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                    ++k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk  
  30128.m008617 448 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKPA 487
                    689**********************************975 PP
2TCR536.9e-17533572140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+gCnCkks+ClkkYCeCf+ g+ Cs++C+Ce+CkN+ 
  30128.m008617 533 RHKRGCNCKKSNCLKKYCECFQGGVGCSSNCRCEGCKNSF 572
                    589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-17447488IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.557448573IPR005172CRC domain
PfamPF036385.1E-11450485IPR005172CRC domain
SMARTSM011142.6E-17533574IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-12535571IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MELNTPNRNH TISSSSSSST PLSQFQDSPV FNYINNLSPI ELAKSVHSTD QTFNSLSFSS  60
PPSVFASPKL TSLRDTRSFL KRRQFLETLK PVLSHSKDDN NTSEGVPEAV ELDNSNTSAK  120
EVTAEQPGEH LELAIELPQS LKNNGASTDS NIVPLDAIRT DTHTEKAEIS NERHSSYESE  180
KHLRKICRIE QNEDEAGGNW VALISNVDDM LHFESSIIEE QPEEQKMVDP GTISFISNVL  240
QIPQDNNNDT ENMESTNFVG SLELKMGEPG TQSTESLNKK ETDKLHAVPS STLQNKLAVS  300
DAAVEVDIKG KKCQSSCKQQ NRIRRLVFEM GGAHKKKSVC NSDGTSSILP QSDCEVAPVE  360
KHSTPRISTL SRKGIGLHLN ALATTSGDGK VIKIETLSST KQEINLVLYD CEDKVMENAP  420
QTSVGVTEDV GISSPKIKRH KLEHVGASCK RCNCKRSKCL KLYCDCFAAG LYCIEPCSCQ  480
DCFNKPAHED TVLETRKQIE SRNPLAFAPK VIRSTDYVSD FGDETNKTPA SARHKRGCNC  540
KKSNCLKKYC ECFQGGVGCS SNCRCEGCKN SFGSKNGFEE NETEDGESEA FEKNDEGEEE  600
HADLLRPSGT ARSSIQLPMT FSGMLSRSLS AVGGSTQMRT SQKLGTEVSC QPKFETHLQV  660
IPEEEAPETL TSNCSAISGV KSTSPNCKRV SPPHHGFGAS ANWKSSRKLI LRSVPPFPSL  720
NSPNQQKFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1845057012120Protein lin-54 homolog
5fd3_B1e-1845057012120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015584641.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLB9RER40.0B9RER4_RICCO; Tso1, putative
STRINGXP_002512233.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-83TESMIN/TSO1-like CXC 2