PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008610
Common NameLOC8289351, RCOM_1427810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 634aa    MW: 71917.9 Da    PI: 7.3435
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008610genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.46.8e-17112175270
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                    W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ n+++ +i+ ++++
  30128.m008610 112 WSNDEVLALLRIRSSMENWFPEY-----TWEHVSRKLAELGFKRSAEKCKEKFEEENRYFNNINYSKNN 175
                    ********************998.....9********************************99987765 PP
2trihelix93.61.9e-29482569186
       trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k+evlaLi++r ++ ++ ++   +  k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  30128.m008610 482 RWPKDEVLALINLRCSLCNSNEDkeaTTVKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPYFHQLS 569
                    8**************88877775222569********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.9108165IPR001005SANT/Myb domain
PfamPF138373.1E-12110184No hitNo description
PROSITE profilePS500906.33111163IPR017877Myb-like domain
SMARTSM007171.8479544IPR001005SANT/Myb domain
CDDcd122033.27E-24481549No hitNo description
PfamPF138379.3E-19481569No hitNo description
PROSITE profilePS500906.597482542IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MFEGVPDQFH QFIASRTSSL PLPVSFPPLH GSSTSSNTSF SSFYHPYTTA TTITNSHHNQ  60
QVPLQHPNFL HSLHHSSHPT GKNHEDKEED SMVAMNLEIE RERSIQESVD PWSNDEVLAL  120
LRIRSSMENW FPEYTWEHVS RKLAELGFKR SAEKCKEKFE EENRYFNNIN YSKNNYRFFG  180
ELEELYNGHN NQNPQEAVAA EKNKKMDKAS QKEEDKIEQN VEEDSRVDQT VGNYPTEEDN  240
NGKEVEKSKS KKRKRQIKFE MFKGFCEDII SKIMAQQEEM HNKLLEDMVK RDEEKVAREE  300
AWKKQEIDRI NKELELRAQE QVLAGDRQTA IINFLKKFSS SSSSSSCSSI EILQHSSAHD  360
LLKVPNSSNP SSSSSLVIAH NPNPTSQTNN QSKPEAPTST RIALGHQDSS PAQAKSKPAK  420
LTSLQEKQAP QIPSSSSFSI ATTQNPKLLN SQSNPLAPSS LSNDILYKKP TTSNNKDDLG  480
KRWPKDEVLA LINLRCSLCN SNEDKEATTV KAPLWERISQ GMLELGYKRS AKRCKEKWEN  540
INKYFRKTKD VNKKRSVDSR TCPYFHQLST LYNQGTLAAP PLEAGKERPQ SALPENHTAS  600
KLNSSLNNGS SNSTLLGNEG EKNLAQASGF DFEF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512226.10.0trihelix transcription factor GTL2
TrEMBLB9REQ70.0B9REQ7_RICCO; Transcription factor, putative
STRINGXP_002512226.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-110Trihelix family protein