PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008580
Common NameRCOM_1438700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 453aa    MW: 50574.9 Da    PI: 7.8061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008580genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-055375123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ C+k F r  nL+ H r H
  30128.m008580 53 YICEVCHKGFQRDQNLQLHRRGH 75
                   89*******************88 PP
2zf-C2H212.80.00037129151123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H + +
  30128.m008580 129 WKCDKCSKCYAVQSDWKAHTKIC 151
                    58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-55275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-55275No hitNo description
PROSITE profilePS5015710.7415375IPR007087Zinc finger, C2H2
SMARTSM003550.0385375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SMARTSM0035520094124IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.3E-5124149No hitNo description
SMARTSM00355160129149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSNFFQELDD DVEQFQGTIV SQSSNGSPNP TENDPDAEVV ALSPRTLMAT NRYICEVCHK  60
GFQRDQNLQL HRRGHNLPWK LKQRPTTQIK KRVYVCPEPT CMHHDPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKCYAV QSDWKAHTKI CGTREYRCDC GTIFSRKDSF ITHRAFCDAL  180
AEENYKANQN LAATGGILQS QVPELVTSTM PSSISCSKKN SIMNLTNPYE NIDISLRPLS  240
LNSDRLLMPS KLSPMLNPRA SLACLNSPDE SNVSPMAIGA PYTSATALLQ KAAEMGTKIS  300
DNSISPILLR GFTGYSTSRM NSSGSAHEGS VIVSSNMGPT AASMNNLFVG ETEFDENFNP  360
GYPRNGYSIS QTQFCESPLN MHPESRNNVN ILRGEVYTEG GKKMTLDFLE VEPIEHSTIG  420
KKRHYEGNIM ELGYSNPHQN LHSSNSEWKQ GYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-32125183361Zinc finger protein JACKDAW
5b3h_F6e-32125183361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025011901.10.0protein indeterminate-domain 12-like
SwissprotQ9SCQ61e-104IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLB9RG230.0B9RG23_RICCO; Nucleic acid binding protein, putative
STRINGXP_002512692.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]