PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30105
Common NameMICPUCDRAFT_30105
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family Whirly
Protein Properties Length: 303aa    MW: 32762.6 Da    PI: 10.9479
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30105genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly122.82.1e-381462852137
  Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelana...taerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkalkvePlp 100
             ++k+k+a+++ a++ptfe l  g+ + kr+G+++le+a+    +++++ydW++kqs +ls+ e  el + la++   +ffhdp +++s +G+  k+lk eP+p
   30105 146 IHKSKTAVQMSAIKPTFELLPNGSKQKKRDGAMFLEFAPVaagAGQKQYDWSRKQSISLSPLEFMELSEaLAANRGVNFFHDPWMGTSRQGETTKSLKAEPMP 248
             89***********************************986222579********************************************************* PP

  Whirly 101 dGs.GlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
             dGs G+f+nl+v ++  +++ ++ + vs  efav+r+l
   30105 249 DGSgGIFLNLTVASGGGRVE-KLNIAVSFQEFAVFREL 285
             ***99**********87775.699**********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.9E-52137301IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.18E-27138300IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.4E-49146284IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSLARAFRTR SATSLARAAA HRASSSSFHS QQQQRQQQQR QPRPSGGGAP PTPQTPPQGA  60
ASPGFAAKPF QGVPNFSSAS ANAPAYQQRF EQRAQQQQQQ QYGGGGGGGQ QQQQQQQRPP  120
PQQKQRYAAE RGGDAGAPKV YCNFAIHKSK TAVQMSAIKP TFELLPNGSK QKKRDGAMFL  180
EFAPVAAGAG QKQYDWSRKQ SISLSPLEFM ELSEALAANR GVNFFHDPWM GTSRQGETTK  240
SLKAEPMPDG SGGIFLNLTV ASGGGRVEKL NIAVSFQEFA VFRELARYLV PRLTGFSEQF  300
EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-2713529633190p24: plant transcriptional regulator PBF-2
1l3a_B3e-2713529633190p24: plant transcriptional regulator PBF-2
1l3a_C3e-2713529633190p24: plant transcriptional regulator PBF-2
1l3a_D3e-2713529633190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063954.10.0predicted protein
TrEMBLC1N7R50.0C1N7R5_MICPC; Predicted protein
STRINGXP_003063954.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.22e-28ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]