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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30093.m000364 | ||||||||
Common Name | LOC8277541, RCOM_1375070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 546aa MW: 56768.2 Da PI: 7.8382 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.1 | 5.3e-41 | 154 | 262 | 2 | 94 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl+qa+pai+++tgt++++a+++ ++s +ss+ + s++ 30093.m000364 154 TPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTIPANFStLNVSLRSSGCTLSAPpsksaphs 249 789******************************************************************999777777777664444444444444 PP TCP 89 ........kaaksa 94 + a + 30093.m000364 250 fhgalalaQ-AHHH 262 444443321.1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-38 | 159 | 264 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.426 | 160 | 214 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MELTDMQNKK QNNTSSNQEP HHQQQQHHHH HHHHHQVAFD GRGPPSQGGP FMGSISIQAG 60 LSRTSNPLHH HQQQQQQQQQ HNLASSTPTT ATTGSTPSTS LSSSTSSTSA STSSAPTTPH 120 LVDASLAIAT RSGPSLSIVT STATTTTATA AAATPAKRST KDRHTKVDGR GRRIRMPATC 180 AARVFQLTRE LGHKSDGETI EWLLRQAEPA IIAATGTGTI PANFSTLNVS LRSSGCTLSA 240 PPSKSAPHSF HGALALAQAH HHSHYDQEGF AHTGMLGFHH HQHLLTADQI AEALPSGGGE 300 SGGGGGDGDS SENYARKRYR EDLFKEHSQQ ESGGGGGGGG GGGGGSPNKG FKTGLQLPKG 360 QQQETGSTGL LRPSNMLPAT AMWAVAPAPT SGTAGSTFWM LPVTAGGGGG PAMVATPAAS 420 GPAGPSEPVP QMWPFSTATP AAAASGNTLQ APLHFVPRFN LPANLDFGGG RGNALQLGSM 480 LMQQQPSQHL GLSMSETNLG MLAALNAYSR GGLNMNSDQN NPLEQHHQHQ QPQTTNSGDE 540 DPNSSQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 331 | 345 | SGGGGGGGGGGGGGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30093.m000364 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015580758.1 | 0.0 | transcription factor TCP8 | ||||
TrEMBL | B9SSP1 | 0.0 | B9SSP1_RICCO; Transcription factor, putative | ||||
STRING | XP_002529010.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-75 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 30093.m000364 |
Entrez Gene | 8277541 |