PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002313
Common NameRCOM_1355420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 542aa    MW: 60987.3 Da    PI: 7.7566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002313genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-09435482448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+++q+G+g+W+ I + +      Rt+ +++++w+++l
    30078.m002313 435 WTLSEVSKLIDGIAQYGTGRWTDIKKLFFassAYRTPIDLRDKWRNLL 482
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-13424485IPR009057Homeodomain-like
PROSITE profilePS5129414.017427486IPR017930Myb domain
SMARTSM007171.3E-8431484IPR001005SANT/Myb domain
CDDcd116609.17E-17433483No hitNo description
SuperFamilySSF466892.08E-15433491IPR009057Homeodomain-like
PfamPF002495.6E-7435482IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDSGAHSNKK FANMKCQRIK IDEPFVPSLE DDATEVQHLL TEPKSDNVSV EGVLCFDKEN  60
SWKHLELDDF AYGFDYGLKR NYGAQGRGII QGQDDLELGD LDGLLDEVDE VDDIHAANDI  120
SGACEDFLLD VELAEKISDL DCAPSGRSHL GNSSSESQSP GFSGSSNGAL VLSESSTATN  180
SESECKIGSL EKKVVKCELN DSSGGKWEYQ KIVRDGTFMT SHDLENFDEL DDAKPLESSI  240
SSDENEKKAV QPGKMSLRQK RLRKPTKRFI EEFSAPKSKH LMEAEKNLAT ASKDKRLKIK  300
SEDCGGALTY VPKEESLSET ITQETPDDDE KLSDLRSRCI TERQKISSSA LKGKLLKKLN  360
HVRGFKSSPR DESFAVTDTQ VAFESRPRRG RPKKPPSVSV LESDDDHTAS ESEDDSAKRR  420
RSKKSGDRRK HQRMWTLSEV SKLIDGIAQY GTGRWTDIKK LFFASSAYRT PIDLRDKWRN  480
LLRASSVQKQ KLKQNKKEVE QKLKQTMRPL PKSVIRRICE LASLHPYPRF TPGGRYIRRK  540
NN
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519515.20.0uncharacterized protein LOC8284508
TrEMBLB9S0J60.0B9S0J6_RICCO; Uncharacterized protein
STRINGXP_002519515.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-20TRF-like 6