PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30078.m002303
Common NameRCOM_1355220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 748aa    MW: 83191.5 Da    PI: 8.0251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30078.m002303genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-0962104347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+e +  a +q G++ +++I r+++  +   q++++++ +
    30078.m002303  62 AWTREEEESFFTALRQVGKN-FEKITRRVQ-SKNKDQVRHYYYRL 104
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.06E-1153109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-656107IPR009057Homeodomain-like
PROSITE profilePS5129313.26458109IPR017884SANT domain
SMARTSM007176.5E-759107IPR001005SANT/Myb domain
CDDcd001676.89E-762105No hitNo description
PfamPF002491.3E-662104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MESQVSLDSK ALFRGENTSI QQRDPSITSL IPDYVEPQQP VRNLITGKML NAVKKPTRQW  60
AAWTREEEES FFTALRQVGK NFEKITRRVQ SKNKDQVRHY YYRLVRRMNK LLGPGLCLDA  120
KNSKDTNAAM LRWWSLLEKY SCKASKLHLK PRRFKIFIEA LENQLLKDRK KNVRRRPSQL  180
ENGSPSVPSN VNNQNRAPGN ETRTVKLVLM DTQNLQRLGS GKGSLKRNMN ISIIRSNRGD  240
SAAMKPARQR RKQAAYKKWE KAAIAGVSLV ADAAEHLERE TTDKEVEHDQ GMADQKSPDP  300
VEKGLRPLPS FSQNHCVDSY TNIKLKLQLF PIDDGTRRAL EMDNHNPHLE LTLSTRKRIS  360
SVLEHLNRKW GNSSIASGEL MLFPYSVHRE NLTGYQRWTQ DSIVSAVDVY TSIGSPSVFR  420
LRYGWFSNTD VASVALQATP SSSYIPGGNT LDIENETRIM NPVSTSGLST NDLSETCKDQ  480
LATVKKSHAS APSSTDVSSE ISGLSNSAAL SAGEWADSLT NISVGDLLSE VSRDVIPNCI  540
ETPLAQSGQC LQQIPFSCDS FDAAIAAHMS RHQNKILPST LTSHTSSIWD AEETCDAFIF  600
QKNRALRQEN PTSAVDSAGI EQQTNKLTSG TFVERLAGGD CPAAGDPMDE CPPDLQVFSN  660
SAKDFTGLTD IYWPESLGPL DLDLPPSKYH SEEFILSDSL SGLNRLIASS LDAFQNCSFF  720
GLDRKDGTTI LEARESCSFS DFKIGSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMap30078.m002303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574876.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLB9S0I60.0B9S0I6_RICCO; DNA binding protein, putative
STRINGXP_002519505.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1