PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30078.m002259 | ||||||||
Common Name | RCOM_1353670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 26193.6 Da PI: 6.0349 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+lv v+ +G + W+ Ia g++R++k+c++rw++yl 30078.m002259 15 KGPWVEEEDEQLVTFVTIFGDRKWDFIATASGLKRSGKSCRLRWLNYL 62 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 9 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.36 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.72E-20 | 16 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS50090 | 3.95 | 63 | 116 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 66 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAFQVASNQG EKLRKGPWVE EEDEQLVTFV TIFGDRKWDF IATASGLKRS GKSCRLRWLN 60 YLRPNLKRGH ISPEEEQIII QLHELWGNKY VLSICYSAVS HLKKKIEAQE GNFQCKADNA 120 KKDFLYQKGD TGSWKSHMED YKSIKDNIVM SDSPLEQYEL SSLTYLNSPY ETRIYDWMSM 180 LSNEQSGMKI HGDCGGFGSC YCYLMKWNAE DGDSSMLDTL GSLWNMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-14 | 13 | 91 | 5 | 82 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30078.m002259 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015574820.2 | 1e-158 | transcription factor MYB27 | ||||
TrEMBL | B9S0E2 | 1e-169 | B9S0E2_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002519461.1 | 1e-170 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 7e-36 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | 30078.m002259 |